Analysis of interatomic Contacts of Structural Units in PDB entry:
6GAU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GAU entry

There are 2 chains in PDB entry 6GAU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 24	ALA 1501
B	ILE 34	ASN 265

There are 77 helices in PDB entry 6GAU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	35	Right-handed alpha
Helix 2	AA2	A	38	58	Right-handed alpha
Helix 3	AA3	A	94	102	Right-handed alpha
Helix 4	AA4	A	125	131	Right-handed alpha
Helix 5	AA5	A	186	201	Right-handed alpha
Helix 6	AA6	A	256	268	Right-handed alpha
Helix 7	AA7	A	316	329	Right-handed alpha
Helix 8	AA8	A	348	352	Right-handed alpha
Helix 9	AA9	A	377	399	Right-handed alpha
Helix 10	AB1	A	402	429	Right-handed alpha
Helix 11	AB2	A	463	471	Right-handed alpha
Helix 12	AB3	A	492	497	Right-handed alpha
Helix 13	AB4	A	499	510	Right-handed alpha
Helix 14	AB5	A	518	522	Right-handed 310
Helix 15	AB6	A	536	558	Right-handed alpha
Helix 16	AB7	A	583	597	Right-handed alpha
Helix 17	AB8	A	617	626	Right-handed alpha
Helix 18	AB9	A	640	653	Right-handed alpha
Helix 19	AC1	A	655	666	Right-handed alpha
Helix 20	AC2	A	1020	1038	Right-handed alpha
Helix 21	AC3	A	1049	1062	Right-handed alpha
Helix 22	AC4	A	1073	1084	Right-handed alpha
Helix 23	AC5	A	1088	1101	Right-handed alpha
Helix 24	AC6	A	1135	1142	Right-handed alpha
Helix 25	AC7	A	1144	1148	Right-handed 310
Helix 26	AC8	A	1171	1177	Right-handed alpha
Helix 27	AC9	A	1193	1207	Right-handed alpha
Helix 28	AD1	A	1211	1223	Right-handed alpha
Helix 29	AD2	A	1237	1247	Right-handed alpha
Helix 30	AD3	A	1279	1293	Right-handed alpha
Helix 31	AD4	A	1323	1335	Right-handed alpha
Helix 32	AD5	A	1357	1400	Right-handed alpha
Helix 33	AD6	A	1400	1411	Right-handed alpha
Helix 34	AD7	A	1413	1425	Right-handed alpha
Helix 35	AD8	A	1428	1437	Right-handed alpha
Helix 36	AD9	A	1439	1443	Right-handed 310
Helix 37	AE1	A	1444	1471	Right-handed alpha
Helix 38	AE2	A	1471	1490	Right-handed alpha
Helix 39	AE3	B	38	58	Right-handed alpha
Helix 40	AE4	B	94	100	Right-handed alpha
Helix 41	AE5	B	125	131	Right-handed alpha
Helix 42	AE6	B	186	201	Right-handed alpha
Helix 43	AE7	B	256	269	Right-handed alpha
Helix 44	AE8	B	314	329	Right-handed alpha
Helix 45	AE9	B	348	352	Right-handed alpha
Helix 46	AF1	B	377	399	Right-handed alpha
Helix 47	AF2	B	399	421	Right-handed alpha
Helix 48	AF3	B	449	452	Right-handed 310
Helix 49	AF4	B	460	471	Right-handed alpha
Helix 50	AF5	B	492	499	Right-handed alpha
Helix 51	AF6	B	499	510	Right-handed alpha
Helix 52	AF7	B	518	522	Right-handed 310
Helix 53	AF8	B	534	552	Right-handed alpha
Helix 54	AF9	B	552	558	Right-handed alpha
Helix 55	AG1	B	583	597	Right-handed alpha
Helix 56	AG2	B	617	626	Right-handed alpha
Helix 57	AG3	B	640	652	Right-handed alpha
Helix 58	AG4	B	655	666	Right-handed alpha
Helix 59	AG5	B	1020	1040	Right-handed alpha
Helix 60	AG6	B	1049	1062	Right-handed alpha
Helix 61	AG7	B	1073	1084	Right-handed alpha
Helix 62	AG8	B	1088	1101	Right-handed alpha
Helix 63	AG9	B	1135	1143	Right-handed alpha
Helix 64	AH1	B	1144	1148	Right-handed 310
Helix 65	AH2	B	1171	1177	Right-handed alpha
Helix 66	AH3	B	1193	1207	Right-handed alpha
Helix 67	AH4	B	1211	1223	Right-handed alpha
Helix 68	AH5	B	1237	1246	Right-handed alpha
Helix 69	AH6	B	1279	1293	Right-handed alpha
Helix 70	AH7	B	1323	1334	Right-handed alpha
Helix 71	AH8	B	1357	1400	Right-handed alpha
Helix 72	AH9	B	1400	1411	Right-handed alpha
Helix 73	AI1	B	1413	1425	Right-handed alpha
Helix 74	AI2	B	1428	1437	Right-handed alpha
Helix 75	AI3	B	1439	1443	Right-handed 310
Helix 76	AI4	B	1444	1471	Right-handed alpha
Helix 77	AI5	B	1471	1491	Right-handed alpha

There are 24 sheets in PDB entry 6GAU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	144	151	anti-parallel
Strand 3	A	159	163	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	144	151	anti-parallel
Strand 3	A	132	141	anti-parallel
Strand 4	A	169	175	anti-parallel
Strand 5	A	74	79	anti-parallel
Strand 6	A	64	69	anti-parallel
Strand 7	A	205	210	parallel
Strand 8	A	247	251	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	285	295	anti-parallel
Strand 3	A	354	362	anti-parallel
Strand 4	A	300	305	parallel
Strand 5	A	308	309	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	368	first strand
Strand 2	A	374	375	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	480	first strand
Strand 2	A	454	458	parallel
Strand 3	A	527	529	parallel
Strand 4	A	561	563	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	581	first strand
Strand 2	A	569	571	anti-parallel
Strand 3	A	607	609	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	634	637	first strand
Strand 2	A	1016	1019	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1071	1072	first strand
Strand 2	A	1131	1134	anti-parallel
Strand 3	A	1110	1113	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1152	1154	first strand
Strand 2	A	1161	1163	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1178	1181	first strand
Strand 2	A	1186	1189	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1338	1344	first strand
Strand 2	A	1248	1254	anti-parallel
Strand 3	A	1233	1235	anti-parallel
Strand 4	A	1498	1499	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1257	1260	first strand
Strand 2	A	1268	1271	anti-parallel
Strand 3	A	1314	1318	anti-parallel
Strand 4	A	1299	1304	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1346	1349	first strand
Strand 2	A	1352	1355	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	149	151	anti-parallel
Strand 4	B	154	157	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	168	175	anti-parallel
Strand 4	B	74	79	anti-parallel
Strand 5	B	64	69	anti-parallel
Strand 6	B	205	210	parallel
Strand 7	B	247	251	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	281	first strand
Strand 2	B	285	292	anti-parallel
Strand 3	B	355	362	anti-parallel
Strand 4	B	300	305	parallel
Strand 5	B	308	309	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	481	first strand
Strand 2	B	454	459	parallel
Strand 3	B	526	529	parallel
Strand 4	B	561	564	parallel
Strand 5	B	633	637	anti-parallel
Strand 6	B	1016	1019	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	581	first strand
Strand 2	B	569	571	anti-parallel
Strand 3	B	607	609	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1071	1072	first strand
Strand 2	B	1131	1134	anti-parallel
Strand 3	B	1110	1113	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1152	1154	first strand
Strand 2	B	1161	1163	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1178	1182	first strand
Strand 2	B	1185	1189	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1338	1344	first strand
Strand 2	B	1248	1254	anti-parallel
Strand 3	B	1233	1235	anti-parallel
Strand 4	B	1497	1499	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1257	1260	first strand
Strand 2	B	1268	1271	anti-parallel
Strand 3	B	1314	1318	anti-parallel
Strand 4	B	1299	1304	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1346	1349	first strand
Strand 2	B	1352	1355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GAU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GAU