Analysis of interatomic Contacts of Structural Units in PDB entry:
6GAV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GAV entry

There are 2 chains in PDB entry 6GAV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 25	ALA 1501
B	ALA 25	THR 209

There are 85 helices in PDB entry 6GAV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	35	Right-handed alpha
Helix 2	AA2	A	38	59	Right-handed alpha
Helix 3	AA3	A	94	102	Right-handed alpha
Helix 4	AA4	A	125	131	Right-handed alpha
Helix 5	AA5	A	186	200	Right-handed alpha
Helix 6	AA6	A	232	242	Right-handed alpha
Helix 7	AA7	A	256	265	Right-handed alpha
Helix 8	AA8	A	314	331	Right-handed alpha
Helix 9	AA9	A	346	352	Right-handed alpha
Helix 10	AB1	A	377	399	Right-handed alpha
Helix 11	AB2	A	399	431	Right-handed alpha
Helix 12	AB3	A	460	471	Right-handed alpha
Helix 13	AB4	A	492	498	Right-handed alpha
Helix 14	AB5	A	499	510	Right-handed alpha
Helix 15	AB6	A	518	522	Right-handed 310
Helix 16	AB7	A	534	552	Right-handed alpha
Helix 17	AB8	A	552	558	Right-handed alpha
Helix 18	AB9	A	583	597	Right-handed alpha
Helix 19	AC1	A	612	616	Right-handed 310
Helix 20	AC2	A	617	626	Right-handed alpha
Helix 21	AC3	A	640	653	Right-handed alpha
Helix 22	AC4	A	655	666	Right-handed alpha
Helix 23	AC5	A	674	1001	Right-handed alpha
Helix 24	AC6	A	1020	1040	Right-handed alpha
Helix 25	AC7	A	1049	1063	Right-handed alpha
Helix 26	AC8	A	1073	1084	Right-handed alpha
Helix 27	AC9	A	1088	1101	Right-handed alpha
Helix 28	AD1	A	1135	1143	Right-handed alpha
Helix 29	AD2	A	1144	1148	Right-handed 310
Helix 30	AD3	A	1171	1177	Right-handed alpha
Helix 31	AD4	A	1193	1207	Right-handed alpha
Helix 32	AD5	A	1211	1220	Right-handed alpha
Helix 33	AD6	A	1237	1247	Right-handed alpha
Helix 34	AD7	A	1279	1293	Right-handed alpha
Helix 35	AD8	A	1323	1335	Right-handed alpha
Helix 36	AD9	A	1357	1400	Right-handed alpha
Helix 37	AE1	A	1400	1411	Right-handed alpha
Helix 38	AE2	A	1413	1425	Right-handed alpha
Helix 39	AE3	A	1428	1437	Right-handed alpha
Helix 40	AE4	A	1439	1443	Right-handed 310
Helix 41	AE5	A	1444	1471	Right-handed alpha
Helix 42	AE6	A	1471	1491	Right-handed alpha
Helix 43	AE7	B	25	29	Right-handed 310
Helix 44	AE8	B	30	35	Right-handed alpha
Helix 45	AE9	B	38	60	Right-handed alpha
Helix 46	AF1	B	94	102	Right-handed alpha
Helix 47	AF2	B	125	131	Right-handed alpha
Helix 48	AF3	B	186	201	Right-handed alpha
Helix 49	AF4	B	232	241	Right-handed alpha
Helix 50	AF5	B	256	265	Right-handed alpha
Helix 51	AF6	B	314	332	Right-handed alpha
Helix 52	AF7	B	346	352	Right-handed alpha
Helix 53	AF8	B	377	399	Right-handed alpha
Helix 54	AF9	B	399	429	Right-handed alpha
Helix 55	AG1	B	460	471	Right-handed alpha
Helix 56	AG2	B	487	491	Right-handed 310
Helix 57	AG3	B	492	499	Right-handed alpha
Helix 58	AG4	B	499	510	Right-handed alpha
Helix 59	AG5	B	518	522	Right-handed 310
Helix 60	AG6	B	534	552	Right-handed alpha
Helix 61	AG7	B	552	558	Right-handed alpha
Helix 62	AG8	B	583	594	Right-handed alpha
Helix 63	AG9	B	612	616	Right-handed 310
Helix 64	AH1	B	617	626	Right-handed alpha
Helix 65	AH2	B	640	653	Right-handed alpha
Helix 66	AH3	B	655	665	Right-handed alpha
Helix 67	AH4	B	1020	1040	Right-handed alpha
Helix 68	AH5	B	1049	1062	Right-handed alpha
Helix 69	AH6	B	1073	1084	Right-handed alpha
Helix 70	AH7	B	1088	1101	Right-handed alpha
Helix 71	AH8	B	1137	1142	Right-handed alpha
Helix 72	AH9	B	1144	1148	Right-handed 310
Helix 73	AI1	B	1171	1177	Right-handed alpha
Helix 74	AI2	B	1193	1207	Right-handed alpha
Helix 75	AI3	B	1211	1220	Right-handed alpha
Helix 76	AI4	B	1237	1247	Right-handed alpha
Helix 77	AI5	B	1279	1293	Right-handed alpha
Helix 78	AI6	B	1323	1335	Right-handed alpha
Helix 79	AI7	B	1357	1400	Right-handed alpha
Helix 80	AI8	B	1400	1411	Right-handed alpha
Helix 81	AI9	B	1413	1425	Right-handed alpha
Helix 82	AJ1	B	1428	1437	Right-handed alpha
Helix 83	AJ2	B	1439	1443	Right-handed 310
Helix 84	AJ3	B	1444	1471	Right-handed alpha
Helix 85	AJ4	B	1471	1491	Right-handed alpha

There are 23 sheets in PDB entry 6GAV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	144	151	anti-parallel
Strand 3	A	159	160	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	144	151	anti-parallel
Strand 3	A	132	141	anti-parallel
Strand 4	A	168	175	anti-parallel
Strand 5	A	74	79	anti-parallel
Strand 6	A	64	69	anti-parallel
Strand 7	A	205	210	parallel
Strand 8	A	247	251	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	281	first strand
Strand 2	A	285	293	anti-parallel
Strand 3	A	354	362	anti-parallel
Strand 4	A	300	305	parallel
Strand 5	A	308	309	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	368	first strand
Strand 2	A	374	375	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	481	first strand
Strand 2	A	454	459	parallel
Strand 3	A	526	530	parallel
Strand 4	A	561	563	parallel
Strand 5	A	632	637	anti-parallel
Strand 6	A	1014	1019	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	579	581	first strand
Strand 2	A	569	571	anti-parallel
Strand 3	A	607	609	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1071	1072	first strand
Strand 2	A	1131	1134	anti-parallel
Strand 3	A	1110	1113	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1152	1154	first strand
Strand 2	A	1161	1163	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1181	1182	first strand
Strand 2	A	1185	1186	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1338	1344	first strand
Strand 2	A	1248	1254	anti-parallel
Strand 3	A	1233	1235	anti-parallel
Strand 4	A	1497	1499	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1256	1261	first strand
Strand 2	A	1267	1273	anti-parallel
Strand 3	A	1314	1318	anti-parallel
Strand 4	A	1299	1304	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1346	1349	first strand
Strand 2	A	1352	1355	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	154	160	first strand
Strand 2	B	144	151	anti-parallel
Strand 3	B	132	141	anti-parallel
Strand 4	B	168	175	anti-parallel
Strand 5	B	74	78	anti-parallel
Strand 6	B	64	69	anti-parallel
Strand 7	B	205	210	parallel
Strand 8	B	247	252	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	281	first strand
Strand 2	B	285	293	anti-parallel
Strand 3	B	354	362	anti-parallel
Strand 4	B	300	305	parallel
Strand 5	B	308	309	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	368	first strand
Strand 2	B	374	375	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	481	first strand
Strand 2	B	454	459	parallel
Strand 3	B	526	530	parallel
Strand 4	B	561	563	parallel
Strand 5	B	632	637	anti-parallel
Strand 6	B	1014	1019	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	581	first strand
Strand 2	B	569	571	anti-parallel
Strand 3	B	607	609	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1071	1072	first strand
Strand 2	B	1131	1134	anti-parallel
Strand 3	B	1110	1113	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1152	1154	first strand
Strand 2	B	1161	1163	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1181	1182	first strand
Strand 2	B	1185	1186	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1338	1344	first strand
Strand 2	B	1248	1254	anti-parallel
Strand 3	B	1233	1235	anti-parallel
Strand 4	B	1497	1499	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1256	1261	first strand
Strand 2	B	1267	1273	anti-parallel
Strand 3	B	1314	1318	anti-parallel
Strand 4	B	1299	1304	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1346	1349	first strand
Strand 2	B	1352	1355	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GAV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GAV