Analysis of interatomic Contacts of Structural Units in PDB entry:
6GB0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GB0 entry

There are 2 chains in PDB entry 6GB0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 16GLY 153
A
 ASP 155ASP 442
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6GB0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 30Right-handed alpha
Helix 2
AA2
A
40 44Right-handed alpha
Helix 3
AA3
A
72 76Right-handed 310
Helix 4
AA4
A
170 180Right-handed alpha
Helix 5
AA5
A
218 230Right-handed alpha
Helix 6
AA6
A
243 257Right-handed alpha
Helix 7
AA7
A
275 284Right-handed alpha
Helix 8
AA8
A
325 345Right-handed alpha
Helix 9
AA9
A
402 407Right-handed 310
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There are 8 sheets in PDB entry 6GB0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 18first strand
Strand 2
A
285 292parallel
Strand 3
A
298 305anti-parallel
Strand 4
A
316 322anti-parallel
Strand 5
A
261 265parallel
Strand 6
A
193 198parallel
Strand 7
A
234 240parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
47 48anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
161 163anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
149 150anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 120first strand
Strand 2
A
68 71anti-parallel
Strand 3
A
102 105anti-parallel
Strand 4
A
78 86parallel
Strand 5
A
136 139anti-parallel
Strand 6
A
124 127anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
215 216parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 359first strand
Strand 2
A
389 394parallel
Strand 3
A
371 380anti-parallel
Strand 4
A
411 415anti-parallel
Strand 5
A
427 432anti-parallel
Strand 6
A
354 359anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
363 364first strand
Strand 2
A
421 422anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il