Analysis of interatomic Contacts of Structural Units in PDB entry:
6GBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GBH entry

There are 4 chains in PDB entry 6GBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN 1PRO 108
D
 GLN 1PRO 108
C
 SER 56VAL 412
A
 THR 58VAL 412
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6GBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
40 42Right-handed 310
Helix 2
AA2
B
51 53Right-handed 310
Helix 3
AA3
B
79 83Right-handed 310
Helix 4
AA4
D
40 42Right-handed 310
Helix 5
AA5
D
79 83Right-handed 310
Helix 6
AA6
C
59 77Right-handed alpha
Helix 7
AA7
C
81 103Right-handed alpha
Helix 8
AA8
C
136 142Right-handed 310
Helix 9
AA9
C
151 172Right-handed alpha
Helix 10
AB1
C
219 238Right-handed alpha
Helix 11
AB2
C
267 297Right-handed alpha
Helix 12
AB3
C
317 349Right-handed alpha
Helix 13
AB4
C
379 396Right-handed alpha
Helix 14
AB5
C
397 410Right-handed alpha
Helix 15
AB6
A
59 76Right-handed alpha
Helix 16
AB7
A
81 102Right-handed alpha
Helix 17
AB8
A
103 105Right-handed 310
Helix 18
AB9
A
137 142Right-handed 310
Helix 19
AC1
A
151 172Right-handed alpha
Helix 20
AC2
A
219 238Right-handed alpha
Helix 21
AC3
A
266 297Right-handed alpha
Helix 22
AC4
A
320 350Right-handed alpha
Helix 23
AC5
A
354 358Right-handed 310
Helix 24
AC6
A
369 373Right-handed 310
Helix 25
AC7
A
379 396Right-handed alpha
Helix 26
AC8
A
397 412Right-handed alpha
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There are 7 sheets in PDB entry 6GBH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
17 22anti-parallel
Strand 3
B
73 75anti-parallel
Strand 4
B
65 67anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
97 107parallel
Strand 3
B
84 92anti-parallel
Strand 4
B
28 35anti-parallel
Strand 5
B
44 49anti-parallel
Strand 6
B
54 57anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
17 22anti-parallel
Strand 3
D
73 75anti-parallel
Strand 4
D
65 67anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 57first strand
Strand 2
D
44 49anti-parallel
Strand 3
D
28 35anti-parallel
Strand 4
D
84 92anti-parallel
Strand 5
D
97 104anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 134first strand
Strand 2
C
121 123anti-parallel
Strand 3
C
182 191anti-parallel
Strand 4
C
208 217anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
240 241first strand
Strand 2
C
265 266anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 135first strand
Strand 2
A
120 123anti-parallel
Strand 3
A
182 191anti-parallel
Strand 4
A
208 217anti-parallel
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