Analysis of interatomic Contacts of Structural Units in PDB entry:
6GBS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GBS entry

There are 2 chains in PDB entry 6GBS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 333
B
 MET 1ALA 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 40 helices in PDB entry 6GBS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 11Right-handed alpha
Helix 2
AA2
A
12 14Right-handed 310
Helix 3
AA3
A
52 57Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
88 92Right-handed 310
Helix 6
AA6
A
111 119Right-handed alpha
Helix 7
AA7
A
129 136Right-handed alpha
Helix 8
AA8
A
136 147Right-handed alpha
Helix 9
AA9
A
150 158Right-handed alpha
Helix 10
AB1
A
192 195Right-handed 310
Helix 11
AB2
A
209 213Right-handed 310
Helix 12
AB3
A
214 216Right-handed 310
Helix 13
AB4
A
217 236Right-handed alpha
Helix 14
AB5
A
240 242Right-handed 310
Helix 15
AB6
A
269 273Right-handed 310
Helix 16
AB7
A
280 290Right-handed alpha
Helix 17
AB8
A
293 297Right-handed 310
Helix 18
AB9
A
303 307Right-handed 310
Helix 19
AC1
A
317 323Right-handed alpha
Helix 20
AC2
A
323 332Right-handed alpha
Helix 21
AC3
B
2 11Right-handed alpha
Helix 22
AC4
B
12 14Right-handed 310
Helix 23
AC5
B
52 57Right-handed alpha
Helix 24
AC6
B
58 62Right-handed 310
Helix 25
AC7
B
88 92Right-handed 310
Helix 26
AC8
B
111 119Right-handed alpha
Helix 27
AC9
B
129 136Right-handed alpha
Helix 28
AD1
B
136 147Right-handed alpha
Helix 29
AD2
B
150 158Right-handed alpha
Helix 30
AD3
B
192 195Right-handed 310
Helix 31
AD4
B
209 213Right-handed 310
Helix 32
AD5
B
214 216Right-handed 310
Helix 33
AD6
B
217 236Right-handed alpha
Helix 34
AD7
B
240 242Right-handed 310
Helix 35
AD8
B
269 273Right-handed 310
Helix 36
AD9
B
280 289Right-handed alpha
Helix 37
AE1
B
293 297Right-handed 310
Helix 38
AE2
B
303 307Right-handed 310
Helix 39
AE3
B
317 323Right-handed alpha
Helix 40
AE4
B
323 332Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6GBS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 23first strand
Strand 2
A
28 35anti-parallel
Strand 3
A
38 46anti-parallel
Strand 4
A
102 107anti-parallel
Strand 5
B
75 81anti-parallel
Strand 6
B
65 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 72first strand
Strand 2
A
75 81anti-parallel
Strand 3
B
102 107anti-parallel
Strand 4
B
38 46anti-parallel
Strand 5
B
28 35anti-parallel
Strand 6
B
15 23anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 128first strand
Strand 2
A
309 314anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
180 184anti-parallel
Strand 3
A
197 202anti-parallel
Strand 4
A
258 263anti-parallel
Strand 5
A
244 249anti-parallel
Strand 6
A
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 128first strand
Strand 2
B
309 314anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
180 184anti-parallel
Strand 3
B
197 202anti-parallel
Strand 4
B
258 263anti-parallel
Strand 5
B
244 249anti-parallel
Strand 6
B
277 279anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il