Analysis of interatomic Contacts of Structural Units in PDB entry:
6GBU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GBU entry

There are 8 chains in PDB entry 6GBU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 63
B	PRO 3	PRO 65
C	SER 2	ALA 63
D	LYS 2	PRO 65
F	PRO 3	PRO 65
H	PRO 3	PRO 65
E	VAL 6	LEU 57
G	VAL 6	GLU 59

There is 1 helix in PDB entry 6GBU. Click on helix number for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	56	58	Right-handed 310

There are 8 sheets in PDB entry 6GBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	54	first strand
Strand 2	A	41	46	anti-parallel
Strand 3	A	27	32	anti-parallel
Strand 4	A	5	8	anti-parallel
Strand 5	A	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	27	33	anti-parallel
Strand 4	B	5	8	anti-parallel
Strand 5	B	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	54	first strand
Strand 2	C	41	46	anti-parallel
Strand 3	C	27	32	anti-parallel
Strand 4	C	5	8	anti-parallel
Strand 5	C	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	56	first strand
Strand 2	D	38	44	anti-parallel
Strand 3	D	27	33	anti-parallel
Strand 4	D	5	8	anti-parallel
Strand 5	D	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	52	56	first strand
Strand 2	F	38	44	anti-parallel
Strand 3	F	27	33	anti-parallel
Strand 4	F	5	8	anti-parallel
Strand 5	F	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	56	first strand
Strand 2	H	38	44	anti-parallel
Strand 3	H	27	33	anti-parallel
Strand 4	H	5	8	anti-parallel
Strand 5	H	60	63	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	30	first strand
Strand 2	E	44	46	anti-parallel
Strand 3	E	49	51	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	41	46	anti-parallel
Strand 3	G	49	54	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GBU

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GBU