Analysis of interatomic Contacts of Structural Units in PDB entry:
6GC1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GC1 entry

There are 4 chains in PDB entry 6GC1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 9	PHE 572
B	ARG 9	PHE 572
C	GLY 8	PHE 572
D	ARG 9	PHE 572

There are 56 helices in PDB entry 6GC1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	13	Right-handed 310
Helix 2	AA2	A	14	27	Right-handed alpha
Helix 3	AA3	A	30	47	Right-handed alpha
Helix 4	AA4	A	71	76	Right-handed alpha
Helix 5	AA5	A	90	107	Right-handed alpha
Helix 6	AA6	A	123	127	Right-handed 310
Helix 7	AA7	A	128	140	Right-handed alpha
Helix 8	AA8	A	151	158	Right-handed alpha
Helix 9	AA9	A	183	201	Right-handed alpha
Helix 10	AB1	A	243	245	Right-handed 310
Helix 11	AB2	A	296	299	Right-handed 310
Helix 12	AB3	A	331	333	Right-handed 310
Helix 13	AB4	A	470	472	Right-handed 310
Helix 14	AB5	A	551	554	Right-handed 310
Helix 15	AB6	B	10	13	Right-handed 310
Helix 16	AB7	B	14	27	Right-handed alpha
Helix 17	AB8	B	30	47	Right-handed alpha
Helix 18	AB9	B	71	76	Right-handed alpha
Helix 19	AC1	B	90	107	Right-handed alpha
Helix 20	AC2	B	123	127	Right-handed 310
Helix 21	AC3	B	128	140	Right-handed alpha
Helix 22	AC4	B	151	158	Right-handed alpha
Helix 23	AC5	B	183	201	Right-handed alpha
Helix 24	AC6	B	243	245	Right-handed 310
Helix 25	AC7	B	296	299	Right-handed 310
Helix 26	AC8	B	331	333	Right-handed 310
Helix 27	AC9	B	470	472	Right-handed 310
Helix 28	AD1	B	551	554	Right-handed 310
Helix 29	AD2	C	10	13	Right-handed 310
Helix 30	AD3	C	14	27	Right-handed alpha
Helix 31	AD4	C	30	47	Right-handed alpha
Helix 32	AD5	C	71	76	Right-handed alpha
Helix 33	AD6	C	90	107	Right-handed alpha
Helix 34	AD7	C	123	127	Right-handed 310
Helix 35	AD8	C	128	140	Right-handed alpha
Helix 36	AD9	C	151	158	Right-handed alpha
Helix 37	AE1	C	183	201	Right-handed alpha
Helix 38	AE2	C	243	245	Right-handed 310
Helix 39	AE3	C	296	299	Right-handed 310
Helix 40	AE4	C	331	333	Right-handed 310
Helix 41	AE5	C	470	472	Right-handed 310
Helix 42	AE6	C	551	554	Right-handed 310
Helix 43	AE7	D	10	13	Right-handed 310
Helix 44	AE8	D	14	27	Right-handed alpha
Helix 45	AE9	D	30	47	Right-handed alpha
Helix 46	AF1	D	71	76	Right-handed alpha
Helix 47	AF2	D	90	107	Right-handed alpha
Helix 48	AF3	D	123	127	Right-handed 310
Helix 49	AF4	D	128	140	Right-handed alpha
Helix 50	AF5	D	151	158	Right-handed alpha
Helix 51	AF6	D	183	201	Right-handed alpha
Helix 52	AF7	D	243	245	Right-handed 310
Helix 53	AF8	D	296	299	Right-handed 310
Helix 54	AF9	D	331	333	Right-handed 310
Helix 55	AG1	D	470	472	Right-handed 310
Helix 56	AG2	D	551	554	Right-handed 310

There are 32 sheets in PDB entry 6GC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	64	first strand
Strand 2	A	145	147	anti-parallel
Strand 3	A	113	119	parallel
Strand 4	A	80	86	parallel
Strand 5	A	164	168	anti-parallel
Strand 6	A	174	179	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	238	242	anti-parallel
Strand 3	A	247	251	anti-parallel
Strand 4	A	257	262	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	287	first strand
Strand 2	A	290	295	anti-parallel
Strand 3	A	300	305	anti-parallel
Strand 4	A	310	315	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	386	391	anti-parallel
Strand 3	A	365	369	anti-parallel
Strand 4	A	356	360	anti-parallel
Strand 5	A	342	343	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	375	first strand
Strand 2	A	381	382	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	418	first strand
Strand 2	A	425	430	anti-parallel
Strand 3	A	435	440	anti-parallel
Strand 4	A	446	451	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	468	first strand
Strand 2	A	508	513	anti-parallel
Strand 3	A	498	503	anti-parallel
Strand 4	A	488	493	anti-parallel
Strand 5	A	481	483	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	525	first strand
Strand 2	A	565	568	anti-parallel
Strand 3	A	555	560	anti-parallel
Strand 4	A	545	550	anti-parallel
Strand 5	A	538	539	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	64	first strand
Strand 2	B	145	147	anti-parallel
Strand 3	B	113	119	parallel
Strand 4	B	80	86	parallel
Strand 5	B	164	168	anti-parallel
Strand 6	B	174	179	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	238	242	anti-parallel
Strand 3	B	247	251	anti-parallel
Strand 4	B	257	262	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	287	first strand
Strand 2	B	290	295	anti-parallel
Strand 3	B	300	305	anti-parallel
Strand 4	B	310	315	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	329	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	365	369	anti-parallel
Strand 4	B	355	360	anti-parallel
Strand 5	B	342	344	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	375	first strand
Strand 2	B	381	382	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	418	first strand
Strand 2	B	425	430	anti-parallel
Strand 3	B	435	440	anti-parallel
Strand 4	B	446	451	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	468	first strand
Strand 2	B	508	513	anti-parallel
Strand 3	B	498	503	anti-parallel
Strand 4	B	488	493	anti-parallel
Strand 5	B	481	483	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	525	first strand
Strand 2	B	565	568	anti-parallel
Strand 3	B	555	560	anti-parallel
Strand 4	B	545	550	anti-parallel
Strand 5	B	538	539	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	145	147	anti-parallel
Strand 3	C	113	119	parallel
Strand 4	C	80	86	parallel
Strand 5	C	164	168	anti-parallel
Strand 6	C	174	179	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	238	242	anti-parallel
Strand 3	C	247	251	anti-parallel
Strand 4	C	257	262	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	287	first strand
Strand 2	C	290	295	anti-parallel
Strand 3	C	300	305	anti-parallel
Strand 4	C	310	315	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	329	first strand
Strand 2	C	386	391	anti-parallel
Strand 3	C	365	369	anti-parallel
Strand 4	C	355	360	anti-parallel
Strand 5	C	342	344	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	375	first strand
Strand 2	C	381	382	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	418	first strand
Strand 2	C	425	430	anti-parallel
Strand 3	C	435	440	anti-parallel
Strand 4	C	446	451	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	467	468	first strand
Strand 2	C	508	513	anti-parallel
Strand 3	C	498	503	anti-parallel
Strand 4	C	488	493	anti-parallel
Strand 5	C	481	483	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	524	525	first strand
Strand 2	C	565	568	anti-parallel
Strand 3	C	555	560	anti-parallel
Strand 4	C	545	550	anti-parallel
Strand 5	C	538	539	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	64	first strand
Strand 2	D	145	147	anti-parallel
Strand 3	D	113	119	parallel
Strand 4	D	80	86	parallel
Strand 5	D	164	168	anti-parallel
Strand 6	D	174	179	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	230	231	first strand
Strand 2	D	238	242	anti-parallel
Strand 3	D	247	251	anti-parallel
Strand 4	D	257	262	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	284	287	first strand
Strand 2	D	290	295	anti-parallel
Strand 3	D	300	305	anti-parallel
Strand 4	D	310	315	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	329	first strand
Strand 2	D	386	391	anti-parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	356	360	anti-parallel
Strand 5	D	342	343	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	375	first strand
Strand 2	D	381	382	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	418	first strand
Strand 2	D	425	430	anti-parallel
Strand 3	D	435	440	anti-parallel
Strand 4	D	446	451	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	467	468	first strand
Strand 2	D	508	513	anti-parallel
Strand 3	D	498	503	anti-parallel
Strand 4	D	488	493	anti-parallel
Strand 5	D	481	483	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	524	525	first strand
Strand 2	D	565	568	anti-parallel
Strand 3	D	555	560	anti-parallel
Strand 4	D	545	550	anti-parallel
Strand 5	D	538	539	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GC1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GC1