Analysis of interatomic Contacts of Structural Units in PDB entry:
6GC9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GC9 entry

There are 2 chains in PDB entry 6GC9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 24HIS 323
B
 PRO 29PRO 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6GC9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 70Right-handed alpha
Helix 2
AA2
A
111 120Right-handed alpha
Helix 3
AA3
A
144 152Right-handed alpha
Helix 4
AA4
A
155 160Right-handed 310
Helix 5
AA5
A
161 167Right-handed alpha
Helix 6
AA6
A
171 175Right-handed 310
Helix 7
AA7
A
176 189Right-handed alpha
Helix 8
AA8
A
191 198Right-handed alpha
Helix 9
AA9
A
201 223Right-handed alpha
Helix 10
AB1
A
235 246Right-handed alpha
Helix 11
AB2
A
262 267Right-handed alpha
Helix 12
AB3
A
267 281Right-handed alpha
Helix 13
AB4
A
281 286Right-handed alpha
Helix 14
AB5
A
289 301Right-handed alpha
Helix 15
AB6
B
57 70Right-handed alpha
Helix 16
AB7
B
112 120Right-handed alpha
Helix 17
AB8
B
144 152Right-handed alpha
Helix 18
AB9
B
155 160Right-handed 310
Helix 19
AC1
B
161 167Right-handed alpha
Helix 20
AC2
B
174 189Right-handed alpha
Helix 21
AC3
B
191 198Right-handed alpha
Helix 22
AC4
B
201 223Right-handed alpha
Helix 23
AC5
B
235 246Right-handed alpha
Helix 24
AC6
B
267 280Right-handed alpha
Helix 25
AC7
B
281 286Right-handed alpha
Helix 26
AC8
B
289 300Right-handed alpha
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There are 2 sheets in PDB entry 6GC9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 81first strand
Strand 2
A
49 54parallel
Strand 3
A
131 134anti-parallel
Strand 4
A
139 142anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
49 53parallel
Strand 3
B
131 134anti-parallel
Strand 4
B
139 142anti-parallel
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