Analysis of interatomic Contacts of Structural Units in PDB entry:
6GCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GCC entry

There are 2 chains in PDB entry 6GCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 29LEU 319
B
 THR 30LEU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6GCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 69Right-handed alpha
Helix 2
AA2
A
110 119Right-handed alpha
Helix 3
AA3
A
143 154Right-handed alpha
Helix 4
AA4
A
155 159Right-handed 310
Helix 5
AA5
A
160 165Right-handed alpha
Helix 6
AA6
A
170 172Right-handed 310
Helix 7
AA7
A
173 188Right-handed alpha
Helix 8
AA8
A
190 197Right-handed alpha
Helix 9
AA9
A
200 222Right-handed alpha
Helix 10
AB1
A
234 245Right-handed alpha
Helix 11
AB2
A
250 255Right-handed alpha
Helix 12
AB3
A
261 266Right-handed alpha
Helix 13
AB4
A
266 280Right-handed alpha
Helix 14
AB5
A
280 285Right-handed alpha
Helix 15
AB6
A
288 298Right-handed alpha
Helix 16
AB7
B
56 69Right-handed alpha
Helix 17
AB8
B
110 119Right-handed alpha
Helix 18
AB9
B
143 154Right-handed alpha
Helix 19
AC1
B
155 159Right-handed 310
Helix 20
AC2
B
160 166Right-handed alpha
Helix 21
AC3
B
170 172Right-handed 310
Helix 22
AC4
B
173 188Right-handed alpha
Helix 23
AC5
B
190 198Right-handed alpha
Helix 24
AC6
B
200 223Right-handed alpha
Helix 25
AC7
B
234 245Right-handed alpha
Helix 26
AC8
B
250 255Right-handed alpha
Helix 27
AC9
B
261 266Right-handed alpha
Helix 28
AD1
B
266 280Right-handed alpha
Helix 29
AD2
B
280 286Right-handed alpha
Helix 30
AD3
B
288 298Right-handed alpha
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There are 2 sheets in PDB entry 6GCC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
48 52parallel
Strand 3
A
130 133anti-parallel
Strand 4
A
138 141anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
48 52parallel
Strand 3
B
130 133anti-parallel
Strand 4
B
138 141anti-parallel
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