Analysis of interatomic Contacts of Structural Units in PDB entry:
6GCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GCI entry

There are 2 chains in PDB entry 6GCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11PHE 306
B
 GLN 1SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6GCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 45Right-handed alpha
Helix 2
AA2
A
46 52Right-handed alpha
Helix 3
AA3
A
61 74Right-handed alpha
Helix 4
AA4
A
75 80Right-handed 310
Helix 5
AA5
A
81 108Right-handed alpha
Helix 6
AA6
A
110 115Right-handed alpha
Helix 7
AA7
A
115 157Right-handed alpha
Helix 8
AA8
A
165 178Right-handed alpha
Helix 9
AA9
A
178 183Right-handed alpha
Helix 10
AB1
A
185 212Right-handed alpha
Helix 11
AB2
A
213 217Right-handed 310
Helix 12
AB3
A
220 250Right-handed alpha
Helix 13
AB4
A
260 272Right-handed alpha
Helix 14
AB5
A
273 279Right-handed alpha
Helix 15
AB6
A
280 283Right-handed 310
Helix 16
AB7
A
284 306Right-handed alpha
Helix 17
AB8
B
28 30Right-handed 310
Helix 18
AB9
B
87 91Right-handed 310
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There are 3 sheets in PDB entry 6GCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
118 123parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
32 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 13first strand
Strand 2
B
118 123parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il