Analysis of interatomic Contacts of Structural Units in PDB entry:
6GCN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GCN entry

There are 4 chains in PDB entry 6GCN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 150LYS 607
B
 GLY 142CYS 606
C
 MET 150LYS 608
D
 GLY 142CYS 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 6GCN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 157Right-handed 310
Helix 2
AA2
A
160 176Right-handed alpha
Helix 3
AA3
A
176 181Right-handed alpha
Helix 4
AA4
A
200 212Right-handed alpha
Helix 5
AA5
A
221 226Right-handed alpha
Helix 6
AA6
A
230 246Right-handed alpha
Helix 7
AA7
A
256 259Right-handed 310
Helix 8
AA8
A
274 289Right-handed alpha
Helix 9
AA9
A
303 307Right-handed 310
Helix 10
AB1
A
308 313Right-handed 310
Helix 11
AB2
A
327 340Right-handed alpha
Helix 12
AB3
A
349 356Right-handed alpha
Helix 13
AB4
A
361 379Right-handed alpha
Helix 14
AB5
A
385 399Right-handed alpha
Helix 15
AB6
A
408 429Right-handed alpha
Helix 16
AB7
A
462 485Right-handed alpha
Helix 17
AB8
A
490 492Right-handed 310
Helix 18
AB9
A
493 510Right-handed alpha
Helix 19
AC1
A
540 569Right-handed alpha
Helix 20
AC2
A
569 584Right-handed alpha
Helix 21
AC3
A
587 597Right-handed alpha
Helix 22
AC4
B
153 157Right-handed 310
Helix 23
AC5
B
160 176Right-handed alpha
Helix 24
AC6
B
176 182Right-handed alpha
Helix 25
AC7
B
200 213Right-handed alpha
Helix 26
AC8
B
223 229Right-handed alpha
Helix 27
AC9
B
235 246Right-handed alpha
Helix 28
AD1
B
255 259Right-handed 310
Helix 29
AD2
B
274 289Right-handed alpha
Helix 30
AD3
B
290 294Right-handed 310
Helix 31
AD4
B
303 307Right-handed 310
Helix 32
AD5
B
308 313Right-handed 310
Helix 33
AD6
B
327 343Right-handed alpha
Helix 34
AD7
B
349 356Right-handed alpha
Helix 35
AD8
B
361 379Right-handed alpha
Helix 36
AD9
B
385 403Right-handed alpha
Helix 37
AE1
B
408 429Right-handed alpha
Helix 38
AE2
B
462 485Right-handed alpha
Helix 39
AE3
B
490 492Right-handed 310
Helix 40
AE4
B
493 510Right-handed alpha
Helix 41
AE5
B
540 569Right-handed alpha
Helix 42
AE6
B
569 584Right-handed alpha
Helix 43
AE7
B
587 597Right-handed alpha
Helix 44
AE8
C
153 157Right-handed 310
Helix 45
AE9
C
160 176Right-handed alpha
Helix 46
AF1
C
176 182Right-handed alpha
Helix 47
AF2
C
200 213Right-handed alpha
Helix 48
AF3
C
221 226Right-handed alpha
Helix 49
AF4
C
230 246Right-handed alpha
Helix 50
AF5
C
255 259Right-handed 310
Helix 51
AF6
C
274 289Right-handed alpha
Helix 52
AF7
C
303 307Right-handed 310
Helix 53
AF8
C
308 313Right-handed 310
Helix 54
AF9
C
327 340Right-handed alpha
Helix 55
AG1
C
349 356Right-handed alpha
Helix 56
AG2
C
361 379Right-handed alpha
Helix 57
AG3
C
385 397Right-handed alpha
Helix 58
AG4
C
408 429Right-handed alpha
Helix 59
AG5
C
462 474Right-handed alpha
Helix 60
AG6
C
474 485Right-handed alpha
Helix 61
AG7
C
490 492Right-handed 310
Helix 62
AG8
C
493 510Right-handed alpha
Helix 63
AG9
C
540 569Right-handed alpha
Helix 64
AH1
C
569 584Right-handed alpha
Helix 65
AH2
C
587 597Right-handed alpha
Helix 66
AH3
D
153 157Right-handed 310
Helix 67
AH4
D
160 176Right-handed alpha
Helix 68
AH5
D
176 182Right-handed alpha
Helix 69
AH6
D
200 213Right-handed alpha
Helix 70
AH7
D
221 228Right-handed alpha
Helix 71
AH8
D
235 246Right-handed alpha
Helix 72
AH9
D
255 259Right-handed 310
Helix 73
AI1
D
274 289Right-handed alpha
Helix 74
AI2
D
290 293Right-handed 310
Helix 75
AI3
D
303 307Right-handed 310
Helix 76
AI4
D
308 313Right-handed 310
Helix 77
AI5
D
327 343Right-handed alpha
Helix 78
AI6
D
349 356Right-handed alpha
Helix 79
AI7
D
361 379Right-handed alpha
Helix 80
AI8
D
385 403Right-handed alpha
Helix 81
AI9
D
408 429Right-handed alpha
Helix 82
AJ1
D
462 485Right-handed alpha
Helix 83
AJ2
D
490 492Right-handed 310
Helix 84
AJ3
D
493 510Right-handed alpha
Helix 85
AJ4
D
540 569Right-handed alpha
Helix 86
AJ5
D
569 584Right-handed alpha
Helix 87
AJ6
D
587 597Right-handed alpha
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There are 8 sheets in PDB entry 6GCN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
249 254parallel
Strand 3
A
295 301parallel
Strand 4
A
190 194parallel
Strand 5
A
319 322parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
585 586anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 220first strand
Strand 2
B
250 254parallel
Strand 3
B
296 301parallel
Strand 4
B
190 194parallel
Strand 5
B
320 322parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
438 439first strand
Strand 2
B
585 586anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
216 220first strand
Strand 2
C
249 254parallel
Strand 3
C
295 301parallel
Strand 4
C
190 194parallel
Strand 5
C
320 322parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
438 439first strand
Strand 2
C
585 586anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
216 220first strand
Strand 2
D
249 254parallel
Strand 3
D
295 301parallel
Strand 4
D
190 194parallel
Strand 5
D
320 322parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
438 439first strand
Strand 2
D
585 586anti-parallel
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