Analysis of interatomic Contacts of Structural Units in PDB entry:
6GCO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GCO entry

There are 2 chains in PDB entry 6GCO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 151LYS 607
B
 LYS 151CYS 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 6GCO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
153 157Right-handed 310
Helix 2
AA2
A
160 176Right-handed alpha
Helix 3
AA3
A
177 181Right-handed 310
Helix 4
AA4
A
200 212Right-handed alpha
Helix 5
AA5
A
221 226Right-handed alpha
Helix 6
AA6
A
230 246Right-handed alpha
Helix 7
AA7
A
255 261Right-handed alpha
Helix 8
AA8
A
273 289Right-handed alpha
Helix 9
AA9
A
308 313Right-handed 310
Helix 10
AB1
A
327 340Right-handed alpha
Helix 11
AB2
A
349 356Right-handed alpha
Helix 12
AB3
A
361 372Right-handed alpha
Helix 13
AB4
A
372 379Right-handed alpha
Helix 14
AB5
A
385 398Right-handed alpha
Helix 15
AB6
A
408 429Right-handed alpha
Helix 16
AB7
A
462 474Right-handed alpha
Helix 17
AB8
A
474 485Right-handed alpha
Helix 18
AB9
A
490 492Right-handed 310
Helix 19
AC1
A
493 510Right-handed alpha
Helix 20
AC2
A
540 569Right-handed alpha
Helix 21
AC3
A
569 584Right-handed alpha
Helix 22
AC4
A
587 597Right-handed alpha
Helix 23
AC5
B
153 157Right-handed 310
Helix 24
AC6
B
160 176Right-handed alpha
Helix 25
AC7
B
200 213Right-handed alpha
Helix 26
AC8
B
223 229Right-handed alpha
Helix 27
AC9
B
236 246Right-handed alpha
Helix 28
AD1
B
255 259Right-handed 310
Helix 29
AD2
B
275 289Right-handed alpha
Helix 30
AD3
B
303 307Right-handed 310
Helix 31
AD4
B
308 313Right-handed 310
Helix 32
AD5
B
327 343Right-handed alpha
Helix 33
AD6
B
349 356Right-handed alpha
Helix 34
AD7
B
361 379Right-handed alpha
Helix 35
AD8
B
385 401Right-handed alpha
Helix 36
AD9
B
408 428Right-handed alpha
Helix 37
AE1
B
462 474Right-handed alpha
Helix 38
AE2
B
474 485Right-handed alpha
Helix 39
AE3
B
490 492Right-handed 310
Helix 40
AE4
B
493 510Right-handed alpha
Helix 41
AE5
B
540 569Right-handed alpha
Helix 42
AE6
B
569 584Right-handed alpha
Helix 43
AE7
B
587 597Right-handed alpha
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There are 3 sheets in PDB entry 6GCO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 220first strand
Strand 2
A
249 254parallel
Strand 3
A
295 301parallel
Strand 4
A
190 194parallel
Strand 5
A
319 322parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 439first strand
Strand 2
A
585 586anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 220first strand
Strand 2
B
249 254parallel
Strand 3
B
295 301parallel
Strand 4
B
192 194parallel
Strand 5
B
320 322parallel
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