Analysis of interatomic Contacts of Structural Units in PDB entry:
6GCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GCW entry

There are 2 chains in PDB entry 6GCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 414LEU 685
B
 ASP 414GLN 686
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6GCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
418 420Right-handed 310
Helix 2
AA2
A
461 476Right-handed alpha
Helix 3
AA3
A
506 514Right-handed alpha
Helix 4
AA4
A
519 540Right-handed alpha
Helix 5
AA5
A
548 550Right-handed 310
Helix 6
AA6
A
585 589Right-handed 310
Helix 7
AA7
A
590 597Right-handed alpha
Helix 8
AA8
A
600 617Right-handed alpha
Helix 9
AA9
A
627 629Right-handed 310
Helix 10
AB1
A
630 637Right-handed alpha
Helix 11
AB2
A
648 659Right-handed alpha
Helix 12
AB3
A
662 666Right-handed 310
Helix 13
AB4
A
668 685Right-handed alpha
Helix 14
AB5
B
418 420Right-handed 310
Helix 15
AB6
B
461 477Right-handed alpha
Helix 16
AB7
B
506 514Right-handed alpha
Helix 17
AB8
B
519 540Right-handed alpha
Helix 18
AB9
B
548 550Right-handed 310
Helix 19
AC1
B
585 589Right-handed 310
Helix 20
AC2
B
590 597Right-handed alpha
Helix 21
AC3
B
600 617Right-handed alpha
Helix 22
AC4
B
627 637Right-handed alpha
Helix 23
AC5
B
648 659Right-handed alpha
Helix 24
AC6
B
662 666Right-handed 310
Helix 25
AC7
B
668 685Right-handed alpha
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There are 4 sheets in PDB entry 6GCW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 431first strand
Strand 2
A
434 441anti-parallel
Strand 3
A
449 455anti-parallel
Strand 4
A
496 500anti-parallel
Strand 5
A
486 490anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
552 556first strand
Strand 2
A
559 562anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 430first strand
Strand 2
B
435 442anti-parallel
Strand 3
B
448 455anti-parallel
Strand 4
B
496 500anti-parallel
Strand 5
B
486 490anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 556first strand
Strand 2
B
559 562anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il