Analysis of interatomic Contacts of Structural Units in PDB entry:
6GD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GD1 entry

There are 2 chains in PDB entry 6GD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1THR 191
B
 SER 1THR 191
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6GD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 16Right-handed alpha
Helix 2
AA2
A
32 49Right-handed alpha
Helix 3
AA3
A
65 70Right-handed alpha
Helix 4
AA4
A
95 109Right-handed alpha
Helix 5
AA5
A
126 135Right-handed alpha
Helix 6
AA6
A
136 138Right-handed 310
Helix 7
AA7
A
164 176Right-handed alpha
Helix 8
AA8
B
11 16Right-handed alpha
Helix 9
AA9
B
32 49Right-handed alpha
Helix 10
AB1
B
66 70Right-handed 310
Helix 11
AB2
B
95 108Right-handed alpha
Helix 12
AB3
B
126 135Right-handed alpha
Helix 13
AB4
B
136 138Right-handed 310
Helix 14
AB5
B
164 176Right-handed alpha
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There are 6 sheets in PDB entry 6GD1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
53 59parallel
Strand 3
A
22 28parallel
Strand 4
A
77 82anti-parallel
Strand 5
A
85 91anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 75first strand
Strand 2
B
179 180anti-parallel
Strand 3
B
183 184anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
154 162anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
186 189anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 184first strand
Strand 2
A
179 180anti-parallel
Strand 3
B
74 75anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
54 59parallel
Strand 3
B
23 28parallel
Strand 4
B
77 82anti-parallel
Strand 5
B
85 91anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
154 162anti-parallel
Strand 3
B
114 119anti-parallel
Strand 4
B
186 189anti-parallel
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