Analysis of interatomic Contacts of Structural Units in PDB entry:
6GD2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GD2 entry

There are 4 chains in PDB entry 6GD2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 240LYS 323
B
 MET 242ASN 322
C
 MET 242LYS 320
D
 U 1 U 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6GD2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
256 265Right-handed alpha
Helix 2
AA2
A
266 268Right-handed 310
Helix 3
AA3
A
294 306Right-handed alpha
Helix 4
AA4
B
256 265Right-handed alpha
Helix 5
AA5
B
266 268Right-handed 310
Helix 6
AA6
B
294 306Right-handed alpha
Helix 7
AA7
C
256 265Right-handed alpha
Helix 8
AA8
C
266 268Right-handed 310
Helix 9
AA9
C
294 306Right-handed alpha
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There are 6 sheets in PDB entry 6GD2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 277first strand
Strand 2
A
284 292anti-parallel
Strand 3
A
244 249anti-parallel
Strand 4
A
316 319anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
313 314anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 277first strand
Strand 2
B
284 292anti-parallel
Strand 3
B
244 249anti-parallel
Strand 4
B
316 319anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 310first strand
Strand 2
B
313 314anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
270 277first strand
Strand 2
C
284 292anti-parallel
Strand 3
C
244 249anti-parallel
Strand 4
C
316 319anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
309 310first strand
Strand 2
C
313 314anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il