Analysis of interatomic Contacts of Structural Units in PDB entry:
6GDI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GDI entry

There is 1 chain in PDB entry 6GDI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 33ALA 1271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6GDI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 41Right-handed 310
Helix 2
AA2
A
43 89Right-handed alpha
Helix 3
AA3
A
97 133Right-handed alpha
Helix 4
AA4
A
133 154Right-handed alpha
Helix 5
AA5
A
156 161Right-handed alpha
Helix 6
AA6
A
166 182Right-handed alpha
Helix 7
AA7
A
184 207Right-handed alpha
Helix 8
AA8
A
208 256Right-handed alpha
Helix 9
AA9
A
256 264Right-handed alpha
Helix 10
AB1
A
265 319Right-handed alpha
Helix 11
AB2
A
325 366Right-handed alpha
Helix 12
AB3
A
428 437Right-handed alpha
Helix 13
AB4
A
458 465Right-handed alpha
Helix 14
AB5
A
479 486Right-handed alpha
Helix 15
AB6
A
492 503Right-handed alpha
Helix 16
AB7
A
507 512Right-handed alpha
Helix 17
AB8
A
514 518Right-handed 310
Helix 18
AB9
A
528 544Right-handed alpha
Helix 19
AC1
A
558 573Right-handed alpha
Helix 20
AC2
A
607 615Right-handed alpha
Helix 21
AC3
A
616 625Right-handed alpha
Helix 22
AC4
A
694 703Right-handed alpha
Helix 23
AC5
A
708 719Right-handed alpha
Helix 24
AC6
A
719 737Right-handed alpha
Helix 25
AC7
A
742 757Right-handed alpha
Helix 26
AC8
A
758 794Right-handed alpha
Helix 27
AC9
A
806 848Right-handed alpha
Helix 28
AD1
A
851 859Right-handed alpha
Helix 29
AD2
A
860 899Right-handed alpha
Helix 30
AD3
A
901 906Right-handed alpha
Helix 31
AD4
A
907 957Right-handed alpha
Helix 32
AD5
A
958 963Right-handed alpha
Helix 33
AD6
A
969 1009Right-handed alpha
Helix 34
AD7
A
1070 1081Right-handed alpha
Helix 35
AD8
A
1096 1100Right-handed 310
Helix 36
AD9
A
1101 1106Right-handed alpha
Helix 37
AE1
A
1122 1128Right-handed alpha
Helix 38
AE2
A
1137 1148Right-handed alpha
Helix 39
AE3
A
1150 1157Right-handed alpha
Helix 40
AE4
A
1159 1163Right-handed 310
Helix 41
AE5
A
1173 1186Right-handed alpha
Helix 42
AE6
A
1203 1218Right-handed alpha
Helix 43
AE7
A
1252 1259Right-handed alpha
Helix 44
AE8
A
1261 1271Right-handed alpha
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There are 4 sheets in PDB entry 6GDI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 413first strand
Strand 2
A
388 394anti-parallel
Strand 3
A
444 449anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
466 469first strand
Strand 2
A
547 551parallel
Strand 3
A
577 581parallel
Strand 4
A
418 421parallel
Strand 5
A
593 597parallel
Strand 6
A
602 606anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1049 1056first strand
Strand 2
A
1031 1038anti-parallel
Strand 3
A
1089 1091anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1110 1112first strand
Strand 2
A
1192 1196parallel
Strand 3
A
1222 1226parallel
Strand 4
A
1061 1065parallel
Strand 5
A
1238 1243parallel
Strand 6
A
1246 1251anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il