Analysis of interatomic Contacts of Structural Units in PDB entry:
6GDT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GDT entry

There are 5 chains in PDB entry 6GDT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 566
B	MET 1	PHE 566
C	MET 1	PHE 566
D	MET 1	PHE 566
E	MET 1	PHE 566

There are 90 helices in PDB entry 6GDT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	93	110	Right-handed alpha
Helix 2	AA2	A	113	120	Right-handed alpha
Helix 3	AA3	A	152	156	Right-handed 310
Helix 4	AA4	A	162	178	Right-handed alpha
Helix 5	AA5	A	184	205	Right-handed alpha
Helix 6	AA6	A	250	262	Right-handed alpha
Helix 7	AA7	A	271	294	Right-handed alpha
Helix 8	AA8	A	300	319	Right-handed alpha
Helix 9	AA9	A	320	336	Right-handed alpha
Helix 10	AB1	A	365	376	Right-handed alpha
Helix 11	AB2	A	380	403	Right-handed alpha
Helix 12	AB3	A	442	457	Right-handed alpha
Helix 13	AB4	A	458	460	Right-handed 310
Helix 14	AB5	A	464	480	Right-handed alpha
Helix 15	AB6	A	501	505	Right-handed 310
Helix 16	AB7	A	531	536	Right-handed alpha
Helix 17	AB8	A	541	546	Right-handed alpha
Helix 18	AB9	A	548	566	Right-handed alpha
Helix 19	AC1	B	93	110	Right-handed alpha
Helix 20	AC2	B	113	120	Right-handed alpha
Helix 21	AC3	B	152	156	Right-handed 310
Helix 22	AC4	B	162	178	Right-handed alpha
Helix 23	AC5	B	184	205	Right-handed alpha
Helix 24	AC6	B	250	262	Right-handed alpha
Helix 25	AC7	B	271	294	Right-handed alpha
Helix 26	AC8	B	300	319	Right-handed alpha
Helix 27	AC9	B	320	336	Right-handed alpha
Helix 28	AD1	B	365	376	Right-handed alpha
Helix 29	AD2	B	380	403	Right-handed alpha
Helix 30	AD3	B	442	457	Right-handed alpha
Helix 31	AD4	B	458	460	Right-handed 310
Helix 32	AD5	B	464	480	Right-handed alpha
Helix 33	AD6	B	501	505	Right-handed 310
Helix 34	AD7	B	531	536	Right-handed alpha
Helix 35	AD8	B	541	546	Right-handed alpha
Helix 36	AD9	B	548	566	Right-handed alpha
Helix 37	AE1	C	93	110	Right-handed alpha
Helix 38	AE2	C	113	120	Right-handed alpha
Helix 39	AE3	C	152	156	Right-handed 310
Helix 40	AE4	C	162	178	Right-handed alpha
Helix 41	AE5	C	184	205	Right-handed alpha
Helix 42	AE6	C	250	262	Right-handed alpha
Helix 43	AE7	C	271	294	Right-handed alpha
Helix 44	AE8	C	300	319	Right-handed alpha
Helix 45	AE9	C	320	336	Right-handed alpha
Helix 46	AF1	C	365	376	Right-handed alpha
Helix 47	AF2	C	380	403	Right-handed alpha
Helix 48	AF3	C	442	457	Right-handed alpha
Helix 49	AF4	C	458	460	Right-handed 310
Helix 50	AF5	C	464	480	Right-handed alpha
Helix 51	AF6	C	501	505	Right-handed 310
Helix 52	AF7	C	531	536	Right-handed alpha
Helix 53	AF8	C	541	546	Right-handed alpha
Helix 54	AF9	C	548	566	Right-handed alpha
Helix 55	AG1	D	93	110	Right-handed alpha
Helix 56	AG2	D	113	120	Right-handed alpha
Helix 57	AG3	D	152	156	Right-handed 310
Helix 58	AG4	D	162	178	Right-handed alpha
Helix 59	AG5	D	184	205	Right-handed alpha
Helix 60	AG6	D	250	262	Right-handed alpha
Helix 61	AG7	D	271	294	Right-handed alpha
Helix 62	AG8	D	300	319	Right-handed alpha
Helix 63	AG9	D	320	336	Right-handed alpha
Helix 64	AH1	D	365	376	Right-handed alpha
Helix 65	AH2	D	380	403	Right-handed alpha
Helix 66	AH3	D	442	457	Right-handed alpha
Helix 67	AH4	D	458	460	Right-handed 310
Helix 68	AH5	D	464	480	Right-handed alpha
Helix 69	AH6	D	501	505	Right-handed 310
Helix 70	AH7	D	531	536	Right-handed alpha
Helix 71	AH8	D	541	546	Right-handed alpha
Helix 72	AH9	D	548	566	Right-handed alpha
Helix 73	AI1	E	93	110	Right-handed alpha
Helix 74	AI2	E	113	120	Right-handed alpha
Helix 75	AI3	E	152	156	Right-handed 310
Helix 76	AI4	E	162	178	Right-handed alpha
Helix 77	AI5	E	184	205	Right-handed alpha
Helix 78	AI6	E	250	262	Right-handed alpha
Helix 79	AI7	E	271	294	Right-handed alpha
Helix 80	AI8	E	300	319	Right-handed alpha
Helix 81	AI9	E	320	336	Right-handed alpha
Helix 82	AJ1	E	365	376	Right-handed alpha
Helix 83	AJ2	E	380	403	Right-handed alpha
Helix 84	AJ3	E	442	457	Right-handed alpha
Helix 85	AJ4	E	458	460	Right-handed 310
Helix 86	AJ5	E	464	480	Right-handed alpha
Helix 87	AJ6	E	501	505	Right-handed 310
Helix 88	AJ7	E	531	536	Right-handed alpha
Helix 89	AJ8	E	541	546	Right-handed alpha
Helix 90	AJ9	E	548	566	Right-handed alpha

There are 36 sheets in PDB entry 6GDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	17	22	anti-parallel
Strand 3	A	61	66	anti-parallel
Strand 4	A	42	52	anti-parallel
Strand 5	A	31	36	anti-parallel
Strand 6	A	74	80	anti-parallel
Strand 7	A	88	91	anti-parallel
Strand 8	A	9	11	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	17	22	anti-parallel
Strand 3	A	61	66	anti-parallel
Strand 4	A	42	52	anti-parallel
Strand 5	A	31	36	anti-parallel
Strand 6	A	74	80	anti-parallel
Strand 7	A	83	84	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	131	132	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	215	217	anti-parallel
Strand 3	A	228	233	anti-parallel
Strand 4	A	238	240	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	244	245	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	344	348	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	416	first strand
Strand 2	A	424	426	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	527	528	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	42	52	anti-parallel
Strand 5	B	31	36	anti-parallel
Strand 6	B	74	80	anti-parallel
Strand 7	B	88	91	anti-parallel
Strand 8	B	9	11	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	17	22	anti-parallel
Strand 3	B	61	66	anti-parallel
Strand 4	B	42	52	anti-parallel
Strand 5	B	31	36	anti-parallel
Strand 6	B	74	80	anti-parallel
Strand 7	B	83	84	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	131	132	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	215	217	anti-parallel
Strand 3	B	228	233	anti-parallel
Strand 4	B	238	240	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	244	245	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	338	341	first strand
Strand 2	B	344	348	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	424	426	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	519	first strand
Strand 2	B	527	528	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	61	66	anti-parallel
Strand 4	C	42	52	anti-parallel
Strand 5	C	31	36	anti-parallel
Strand 6	C	74	80	anti-parallel
Strand 7	C	88	91	anti-parallel
Strand 8	C	9	11	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	17	22	anti-parallel
Strand 3	C	61	66	anti-parallel
Strand 4	C	42	52	anti-parallel
Strand 5	C	31	36	anti-parallel
Strand 6	C	74	80	anti-parallel
Strand 7	C	83	84	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	123	124	first strand
Strand 2	C	131	132	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	215	217	anti-parallel
Strand 3	C	228	233	anti-parallel
Strand 4	C	238	240	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	341	first strand
Strand 2	C	344	348	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	416	first strand
Strand 2	C	424	426	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	527	528	anti-parallel

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There are 8 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	17	22	anti-parallel
Strand 3	D	61	66	anti-parallel
Strand 4	D	42	52	anti-parallel
Strand 5	D	31	36	anti-parallel
Strand 6	D	74	80	anti-parallel
Strand 7	D	88	91	anti-parallel
Strand 8	D	9	11	parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	17	22	anti-parallel
Strand 3	D	61	66	anti-parallel
Strand 4	D	42	52	anti-parallel
Strand 5	D	31	36	anti-parallel
Strand 6	D	74	80	anti-parallel
Strand 7	D	83	84	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	D	131	132	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	215	217	anti-parallel
Strand 3	D	228	233	anti-parallel
Strand 4	D	238	240	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	338	339	first strand
Strand 2	D	347	348	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	416	first strand
Strand 2	D	424	426	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	518	519	first strand
Strand 2	D	527	528	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	17	21	anti-parallel
Strand 3	E	62	66	anti-parallel
Strand 4	E	42	52	anti-parallel
Strand 5	E	31	36	anti-parallel
Strand 6	E	74	80	anti-parallel
Strand 7	E	88	91	anti-parallel
Strand 8	E	9	11	parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	4	first strand
Strand 2	E	17	21	anti-parallel
Strand 3	E	62	66	anti-parallel
Strand 4	E	42	52	anti-parallel
Strand 5	E	31	36	anti-parallel
Strand 6	E	74	80	anti-parallel
Strand 7	E	83	84	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	215	217	anti-parallel
Strand 3	E	228	233	anti-parallel
Strand 4	E	238	240	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	338	341	first strand
Strand 2	E	344	348	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	414	416	first strand
Strand 2	E	424	426	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	518	519	first strand
Strand 2	E	527	528	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GDT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GDT