Analysis of interatomic Contacts of Structural Units in PDB entry:
6GE0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GE0 entry

There are 3 chains in PDB entry 6GE0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 11ILE 126
A
 TYR 128THR 160
A
 ASP 162GLY 357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6GE0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 78Right-handed alpha
Helix 2
AA2
A
112 119Right-handed alpha
Helix 3
AA3
A
122 143Right-handed alpha
Helix 4
AA4
A
151 153Right-handed 310
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
190 194Right-handed 310
Helix 7
AA7
A
195 199Right-handed 310
Helix 8
AA8
A
207 224Right-handed alpha
Helix 9
AA9
A
232 245Right-handed alpha
Helix 10
AB1
A
248 254Right-handed alpha
Helix 11
AB2
A
257 267Right-handed alpha
Helix 12
AB3
A
274 279Right-handed alpha
Helix 13
AB4
A
283 294Right-handed alpha
Helix 14
AB5
A
303 309Right-handed alpha
Helix 15
AB6
A
310 314Right-handed 310
Helix 16
AB7
A
318 322Right-handed 310
Helix 17
AB8
A
339 352Right-handed alpha
Helix 18
AB9
A
353 355Right-handed 310
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There are 4 sheets in PDB entry 6GE0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
A
18 19anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 34first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
101 106anti-parallel
Strand 5
A
88 90anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
163 165anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
172 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il