Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GEB entry

There are 4 chains in PDB entry 6GEB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 4	ALA 372
B	ASP 4	GLU 374
C	ASN 5	LYS 373
D	ILE 6	GLU 175

There are182 helices in PDB entry 6GEB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	31	Right-handed alpha
Helix 2	AA2	A	61	73	Right-handed alpha
Helix 3	AA3	A	76	84	Right-handed alpha
Helix 4	AA4	A	132	136	Right-handed 310
Helix 5	AA5	A	138	145	Right-handed alpha
Helix 6	AA6	A	161	176	Right-handed alpha
Helix 7	AA7	A	215	227	Right-handed alpha
Helix 8	AA8	A	238	252	Right-handed alpha
Helix 9	AA9	A	263	274	Right-handed alpha
Helix 10	AB1	A	278	290	Right-handed alpha
Helix 11	AB2	A	317	327	Right-handed alpha
Helix 12	AB3	A	328	330	Right-handed 310
Helix 13	AB4	A	331	344	Right-handed alpha
Helix 14	AB5	A	346	357	Right-handed alpha
Helix 15	AB6	A	361	372	Right-handed alpha
Helix 16	AB7	B	17	31	Right-handed alpha
Helix 17	AB8	B	61	74	Right-handed alpha
Helix 18	AB9	B	76	84	Right-handed alpha
Helix 19	AC1	B	132	136	Right-handed 310
Helix 20	AC2	B	138	145	Right-handed alpha
Helix 21	AC3	B	161	176	Right-handed alpha
Helix 22	AC4	B	215	225	Right-handed alpha
Helix 23	AC5	B	238	252	Right-handed alpha
Helix 24	AC6	B	263	274	Right-handed alpha
Helix 25	AC7	B	276	290	Right-handed alpha
Helix 26	AC8	B	317	327	Right-handed alpha
Helix 27	AC9	B	328	330	Right-handed 310
Helix 28	AD1	B	331	344	Right-handed alpha
Helix 29	AD2	B	346	358	Right-handed alpha
Helix 30	AD3	B	361	374	Right-handed alpha
Helix 31	AD4	C	17	31	Right-handed alpha
Helix 32	AD5	C	61	73	Right-handed alpha
Helix 33	AD6	C	76	84	Right-handed alpha
Helix 34	AD7	C	132	136	Right-handed 310
Helix 35	AD8	C	138	143	Right-handed alpha
Helix 36	AD9	C	161	176	Right-handed alpha
Helix 37	AE1	C	215	227	Right-handed alpha
Helix 38	AE2	C	238	252	Right-handed alpha
Helix 39	AE3	C	263	274	Right-handed alpha
Helix 40	AE4	C	276	290	Right-handed alpha
Helix 41	AE5	C	317	327	Right-handed alpha
Helix 42	AE6	C	328	330	Right-handed 310
Helix 43	AE7	C	331	343	Right-handed alpha
Helix 44	AE8	C	346	357	Right-handed alpha
Helix 45	AE9	C	361	373	Right-handed alpha
Helix 46	AF1	D	17	31	Right-handed alpha
Helix 47	AF2	D	61	74	Right-handed alpha
Helix 48	AF3	D	76	84	Right-handed alpha
Helix 49	AF4	D	132	136	Right-handed 310
Helix 50	AF5	D	138	145	Right-handed alpha
Helix 51	AF6	D	161	176	Right-handed alpha
Helix 52	AF7	D	215	225	Right-handed alpha
Helix 53	AF8	D	238	252	Right-handed alpha
Helix 54	AF9	D	263	274	Right-handed alpha
Helix 55	AG1	D	276	290	Right-handed alpha
Helix 56	AG2	D	317	327	Right-handed alpha
Helix 57	AG3	D	328	330	Right-handed 310
Helix 58	AG4	D	331	344	Right-handed alpha
Helix 59	AG5	D	346	358	Right-handed alpha
Helix 60	AG6	D	361	373	Right-handed alpha
Helix 61	AG7	E	17	31	Right-handed alpha
Helix 62	AG8	E	61	73	Right-handed alpha
Helix 63	AG9	E	76	84	Right-handed alpha
Helix 64	AH1	E	132	136	Right-handed 310
Helix 65	AH2	E	138	143	Right-handed alpha
Helix 66	AH3	E	161	176	Right-handed alpha
Helix 67	AH4	E	215	227	Right-handed alpha
Helix 68	AH5	E	238	252	Right-handed alpha
Helix 69	AH6	E	263	274	Right-handed alpha
Helix 70	AH7	E	279	290	Right-handed alpha
Helix 71	AH8	E	317	327	Right-handed alpha
Helix 72	AH9	E	332	344	Right-handed alpha
Helix 73	AI1	E	346	358	Right-handed alpha
Helix 74	AI2	E	361	372	Right-handed alpha
Helix 75	AI3	F	17	32	Right-handed alpha
Helix 76	AI4	F	61	73	Right-handed alpha
Helix 77	AI5	F	76	83	Right-handed alpha
Helix 78	AI6	F	131	136	Right-handed alpha
Helix 79	AI7	F	138	145	Right-handed alpha
Helix 80	AI8	F	161	176	Right-handed alpha
Helix 81	AI9	F	209	213	Right-handed alpha
Helix 82	AJ1	F	215	225	Right-handed alpha
Helix 83	AJ2	F	238	252	Right-handed alpha
Helix 84	AJ3	F	263	274	Right-handed alpha
Helix 85	AJ4	F	279	290	Right-handed alpha
Helix 86	AJ5	F	317	327	Right-handed alpha
Helix 87	AJ6	F	328	330	Right-handed 310
Helix 88	AJ7	F	331	343	Right-handed alpha
Helix 89	AJ8	F	346	357	Right-handed alpha
Helix 90	AJ9	F	361	373	Right-handed alpha
Helix 91	AK1	G	17	31	Right-handed alpha
Helix 92	AK2	G	61	73	Right-handed alpha
Helix 93	AK3	G	76	84	Right-handed alpha
Helix 94	AK4	G	131	136	Right-handed 310
Helix 95	AK5	G	138	143	Right-handed alpha
Helix 96	AK6	G	161	176	Right-handed alpha
Helix 97	AK7	G	215	224	Right-handed alpha
Helix 98	AK8	G	225	227	Right-handed 310
Helix 99	AK9	G	238	252	Right-handed alpha
Helix 100	AL1	G	263	274	Right-handed alpha
Helix 101	AL2	G	275	277	Right-handed 310
Helix 102	AL3	G	278	290	Right-handed alpha
Helix 103	AL4	G	317	327	Right-handed alpha
Helix 104	AL5	G	332	344	Right-handed alpha
Helix 105	AL6	G	346	358	Right-handed alpha
Helix 106	AL7	G	361	372	Right-handed alpha
Helix 107	AL8	H	17	31	Right-handed alpha
Helix 108	AL9	H	61	74	Right-handed alpha
Helix 109	AM1	H	76	83	Right-handed alpha
Helix 110	AM2	H	132	136	Right-handed 310
Helix 111	AM3	H	138	145	Right-handed alpha
Helix 112	AM4	H	161	176	Right-handed alpha
Helix 113	AM5	H	215	224	Right-handed alpha
Helix 114	AM6	H	238	252	Right-handed alpha
Helix 115	AM7	H	263	274	Right-handed alpha
Helix 116	AM8	H	276	290	Right-handed alpha
Helix 117	AM9	H	317	327	Right-handed alpha
Helix 118	AN1	H	331	344	Right-handed alpha
Helix 119	AN2	H	346	358	Right-handed alpha
Helix 120	AN3	H	361	373	Right-handed alpha
Helix 121	AN4	I	17	31	Right-handed alpha
Helix 122	AN5	I	61	73	Right-handed alpha
Helix 123	AN6	I	76	84	Right-handed alpha
Helix 124	AN7	I	132	136	Right-handed 310
Helix 125	AN8	I	138	145	Right-handed alpha
Helix 126	AN9	I	161	176	Right-handed alpha
Helix 127	AO1	I	215	227	Right-handed alpha
Helix 128	AO2	I	238	252	Right-handed alpha
Helix 129	AO3	I	263	274	Right-handed alpha
Helix 130	AO4	I	276	290	Right-handed alpha
Helix 131	AO5	I	317	327	Right-handed alpha
Helix 132	AO6	I	328	330	Right-handed 310
Helix 133	AO7	I	331	344	Right-handed alpha
Helix 134	AO8	I	346	357	Right-handed alpha
Helix 135	AO9	I	361	373	Right-handed alpha
Helix 136	AP1	J	17	31	Right-handed alpha
Helix 137	AP2	J	61	74	Right-handed alpha
Helix 138	AP3	J	76	84	Right-handed alpha
Helix 139	AP4	J	132	136	Right-handed 310
Helix 140	AP5	J	138	145	Right-handed alpha
Helix 141	AP6	J	161	176	Right-handed alpha
Helix 142	AP7	J	209	213	Right-handed alpha
Helix 143	AP8	J	215	225	Right-handed alpha
Helix 144	AP9	J	238	252	Right-handed alpha
Helix 145	AQ1	J	263	274	Right-handed alpha
Helix 146	AQ2	J	276	290	Right-handed alpha
Helix 147	AQ3	J	317	327	Right-handed alpha
Helix 148	AQ4	J	328	330	Right-handed 310
Helix 149	AQ5	J	331	344	Right-handed alpha
Helix 150	AQ6	J	346	358	Right-handed alpha
Helix 151	AQ7	J	361	373	Right-handed alpha
Helix 152	AQ8	K	17	31	Right-handed alpha
Helix 153	AQ9	K	61	73	Right-handed alpha
Helix 154	AR1	K	76	83	Right-handed alpha
Helix 155	AR2	K	132	136	Right-handed 310
Helix 156	AR3	K	138	144	Right-handed alpha
Helix 157	AR4	K	161	176	Right-handed alpha
Helix 158	AR5	K	209	213	Right-handed alpha
Helix 159	AR6	K	215	227	Right-handed alpha
Helix 160	AR7	K	238	252	Right-handed alpha
Helix 161	AR8	K	263	274	Right-handed alpha
Helix 162	AR9	K	277	290	Right-handed alpha
Helix 163	AS1	K	317	327	Right-handed alpha
Helix 164	AS2	K	328	330	Right-handed 310
Helix 165	AS3	K	331	344	Right-handed alpha
Helix 166	AS4	K	346	358	Right-handed alpha
Helix 167	AS5	K	361	372	Right-handed alpha
Helix 168	AS6	L	17	32	Right-handed alpha
Helix 169	AS7	L	61	73	Right-handed alpha
Helix 170	AS8	L	76	83	Right-handed alpha
Helix 171	AS9	L	132	136	Right-handed 310
Helix 172	AT1	L	138	145	Right-handed alpha
Helix 173	AT2	L	162	176	Right-handed alpha
Helix 174	AT3	L	215	225	Right-handed alpha
Helix 175	AT4	L	238	252	Right-handed alpha
Helix 176	AT5	L	263	274	Right-handed alpha
Helix 177	AT6	L	276	290	Right-handed alpha
Helix 178	AT7	L	317	327	Right-handed alpha
Helix 179	AT8	L	328	330	Right-handed 310
Helix 180	AT9	L	331	344	Right-handed alpha
Helix 181	AU1	L	346	358	Right-handed alpha
Helix 182	AU2	L	361	371	Right-handed alpha

There are 26 sheets in PDB entry 6GEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	45	48	anti-parallel
Strand 3	A	33	39	anti-parallel
Strand 4	A	115	124	anti-parallel
Strand 5	A	101	112	anti-parallel
Strand 6	A	86	93	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	208	first strand
Strand 2	A	181	187	parallel
Strand 3	A	230	233	parallel
Strand 4	A	255	259	parallel
Strand 5	A	151	155	parallel
Strand 6	A	291	301	parallel
Strand 7	A	307	315	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	54	first strand
Strand 2	B	45	48	anti-parallel
Strand 3	B	35	39	anti-parallel
Strand 4	B	115	124	anti-parallel
Strand 5	B	101	112	anti-parallel
Strand 6	B	87	93	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	207	first strand
Strand 2	B	181	186	parallel
Strand 3	B	230	233	parallel
Strand 4	B	254	259	parallel
Strand 5	B	150	155	parallel
Strand 6	B	291	301	parallel
Strand 7	B	307	315	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	45	48	anti-parallel
Strand 3	C	33	39	anti-parallel
Strand 4	C	115	124	anti-parallel
Strand 5	C	101	112	anti-parallel
Strand 6	C	86	93	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	208	first strand
Strand 2	C	181	187	parallel
Strand 3	C	230	233	parallel
Strand 4	C	254	259	parallel
Strand 5	C	150	155	parallel
Strand 6	C	291	301	parallel
Strand 7	C	307	315	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	54	first strand
Strand 2	D	45	48	anti-parallel
Strand 3	D	35	39	anti-parallel
Strand 4	D	115	124	anti-parallel
Strand 5	D	101	112	anti-parallel
Strand 6	D	87	93	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	208	first strand
Strand 2	D	181	187	parallel
Strand 3	D	230	233	parallel
Strand 4	D	255	259	parallel
Strand 5	D	151	155	parallel
Strand 6	D	291	301	parallel
Strand 7	D	307	315	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	45	48	anti-parallel
Strand 3	E	35	39	anti-parallel
Strand 4	E	115	124	anti-parallel
Strand 5	E	101	112	anti-parallel
Strand 6	E	86	93	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	202	208	first strand
Strand 2	E	181	187	parallel
Strand 3	E	230	233	parallel
Strand 4	E	255	259	parallel
Strand 5	E	151	155	parallel
Strand 6	E	291	301	parallel
Strand 7	E	307	315	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	39	first strand
Strand 2	F	115	124	anti-parallel
Strand 3	F	102	112	anti-parallel
Strand 4	F	87	92	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	48	first strand
Strand 2	F	51	54	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	202	208	first strand
Strand 2	F	181	187	parallel
Strand 3	F	230	233	parallel
Strand 4	F	254	259	parallel
Strand 5	F	150	155	parallel
Strand 6	F	291	301	parallel
Strand 7	F	307	315	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	51	54	first strand
Strand 2	G	45	48	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	115	124	anti-parallel
Strand 5	G	101	112	anti-parallel
Strand 6	G	87	93	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	202	208	first strand
Strand 2	G	181	187	parallel
Strand 3	G	230	233	parallel
Strand 4	G	254	259	parallel
Strand 5	G	150	155	parallel
Strand 6	G	291	301	parallel
Strand 7	G	307	314	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	52	54	first strand
Strand 2	H	45	47	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	115	124	anti-parallel
Strand 5	H	101	112	anti-parallel
Strand 6	H	87	93	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	202	207	first strand
Strand 2	H	181	186	parallel
Strand 3	H	230	233	parallel
Strand 4	H	254	259	parallel
Strand 5	H	150	155	parallel
Strand 6	H	291	301	parallel
Strand 7	H	307	315	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	54	first strand
Strand 2	I	45	48	anti-parallel
Strand 3	I	35	39	anti-parallel
Strand 4	I	115	124	anti-parallel
Strand 5	I	101	112	anti-parallel
Strand 6	I	87	93	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	203	208	first strand
Strand 2	I	182	187	parallel
Strand 3	I	230	233	parallel
Strand 4	I	254	259	parallel
Strand 5	I	150	155	parallel
Strand 6	I	291	301	parallel
Strand 7	I	307	315	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	51	54	first strand
Strand 2	J	45	48	anti-parallel
Strand 3	J	35	39	anti-parallel
Strand 4	J	115	124	anti-parallel
Strand 5	J	101	112	anti-parallel
Strand 6	J	87	93	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	202	208	first strand
Strand 2	J	181	187	parallel
Strand 3	J	230	233	parallel
Strand 4	J	254	257	parallel
Strand 5	J	150	155	parallel
Strand 6	J	291	301	parallel
Strand 7	J	307	315	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	51	54	first strand
Strand 2	K	45	48	anti-parallel
Strand 3	K	35	39	anti-parallel
Strand 4	K	115	124	anti-parallel
Strand 5	K	101	112	anti-parallel
Strand 6	K	87	93	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	202	208	first strand
Strand 2	K	181	187	parallel
Strand 3	K	230	233	parallel
Strand 4	K	255	259	parallel
Strand 5	K	151	155	parallel
Strand 6	K	291	301	parallel
Strand 7	K	307	315	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	52	54	first strand
Strand 2	L	45	47	anti-parallel
Strand 3	L	35	39	anti-parallel
Strand 4	L	119	124	anti-parallel
Strand 5	L	102	108	anti-parallel
Strand 6	L	87	92	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	111	112	first strand
Strand 2	L	115	116	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	202	208	first strand
Strand 2	L	181	187	parallel
Strand 3	L	230	233	parallel
Strand 4	L	254	259	parallel
Strand 5	L	150	155	parallel
Strand 6	L	291	301	parallel
Strand 7	L	307	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GEB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEB