Analysis of interatomic Contacts of Structural Units in PDB entry:
6GED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GED entry

There are 3 chains in PDB entry 6GED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 260GLN 554
C
 G 1 G 10
D
 C 1 C 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 6GED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
276 278Right-handed 310
Helix 2
AA2
A
296 301Right-handed alpha
Helix 3
AA3
A
310 316Right-handed alpha
Helix 4
AA4
A
327 329Right-handed 310
Helix 5
AA5
A
334 338Right-handed 310
Helix 6
AA6
A
498 502Right-handed 310
Helix 7
AA7
A
509 514Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 6GED. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
353 364anti-parallel
Strand 3
A
367 380anti-parallel
Strand 4
A
412 422anti-parallel
Strand 5
A
427 428anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 290first strand
Strand 2
A
353 364anti-parallel
Strand 3
A
367 380anti-parallel
Strand 4
A
412 422anti-parallel
Strand 5
A
523 530anti-parallel
Strand 6
A
454 458anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
342 347anti-parallel
Strand 3
A
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 294first strand
Strand 2
A
342 347anti-parallel
Strand 3
A
388 393anti-parallel
Strand 4
A
400 403anti-parallel
Strand 5
A
542 545anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 440first strand
Strand 2
A
515 519anti-parallel
Strand 3
A
464 467anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
482 483anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il