Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GEF entry

There are 4 chains in PDB entry 6GEF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 1	SER 388
B	HIS 5	SER 388
C	LEU 4	SER 388
D	PRO 3	LYS 129

There are 91 helices in PDB entry 6GEF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	37	Right-handed alpha
Helix 2	AA2	A	67	80	Right-handed alpha
Helix 3	AA3	A	83	91	Right-handed alpha
Helix 4	AA4	A	145	150	Right-handed alpha
Helix 5	AA5	A	152	159	Right-handed alpha
Helix 6	AA6	A	172	190	Right-handed alpha
Helix 7	AA7	A	230	240	Right-handed alpha
Helix 8	AA8	A	253	267	Right-handed alpha
Helix 9	AA9	A	278	289	Right-handed alpha
Helix 10	AB1	A	291	305	Right-handed alpha
Helix 11	AB2	A	332	342	Right-handed alpha
Helix 12	AB3	A	347	359	Right-handed alpha
Helix 13	AB4	A	362	373	Right-handed alpha
Helix 14	AB5	A	377	387	Right-handed alpha
Helix 15	AB6	B	23	37	Right-handed alpha
Helix 16	AB7	B	67	78	Right-handed alpha
Helix 17	AB8	B	83	90	Right-handed alpha
Helix 18	AB9	B	145	150	Right-handed alpha
Helix 19	AC1	B	152	158	Right-handed alpha
Helix 20	AC2	B	172	190	Right-handed alpha
Helix 21	AC3	B	224	228	Right-handed alpha
Helix 22	AC4	B	230	240	Right-handed alpha
Helix 23	AC5	B	253	266	Right-handed alpha
Helix 24	AC6	B	278	289	Right-handed alpha
Helix 25	AC7	B	291	305	Right-handed alpha
Helix 26	AC8	B	332	341	Right-handed alpha
Helix 27	AC9	B	347	360	Right-handed alpha
Helix 28	AD1	B	362	373	Right-handed alpha
Helix 29	AD2	B	377	388	Right-handed alpha
Helix 30	AD3	C	23	37	Right-handed alpha
Helix 31	AD4	C	67	79	Right-handed alpha
Helix 32	AD5	C	83	90	Right-handed alpha
Helix 33	AD6	C	145	150	Right-handed alpha
Helix 34	AD7	C	152	159	Right-handed alpha
Helix 35	AD8	C	171	174	Right-handed 310
Helix 36	AD9	C	175	190	Right-handed alpha
Helix 37	AE1	C	230	241	Right-handed alpha
Helix 38	AE2	C	253	266	Right-handed alpha
Helix 39	AE3	C	278	289	Right-handed alpha
Helix 40	AE4	C	291	305	Right-handed alpha
Helix 41	AE5	C	332	341	Right-handed alpha
Helix 42	AE6	C	344	346	Right-handed 310
Helix 43	AE7	C	347	360	Right-handed alpha
Helix 44	AE8	C	362	373	Right-handed alpha
Helix 45	AE9	C	378	387	Right-handed alpha
Helix 46	AF1	D	23	37	Right-handed alpha
Helix 47	AF2	D	67	80	Right-handed alpha
Helix 48	AF3	D	83	90	Right-handed alpha
Helix 49	AF4	D	152	159	Right-handed alpha
Helix 50	AF5	D	172	190	Right-handed alpha
Helix 51	AF6	D	230	240	Right-handed alpha
Helix 52	AF7	D	253	266	Right-handed alpha
Helix 53	AF8	D	278	289	Right-handed alpha
Helix 54	AF9	D	291	305	Right-handed alpha
Helix 55	AG1	D	332	341	Right-handed alpha
Helix 56	AG2	D	347	360	Right-handed alpha
Helix 57	AG3	D	362	373	Right-handed alpha
Helix 58	AG4	D	377	387	Right-handed alpha
Helix 59	AG5	E	23	37	Right-handed alpha
Helix 60	AG6	E	67	79	Right-handed alpha
Helix 61	AG7	E	84	89	Right-handed alpha
Helix 62	AG8	E	145	150	Right-handed alpha
Helix 63	AG9	E	152	159	Right-handed alpha
Helix 64	AH1	E	172	190	Right-handed alpha
Helix 65	AH2	E	230	239	Right-handed alpha
Helix 66	AH3	E	240	242	Right-handed 310
Helix 67	AH4	E	253	266	Right-handed alpha
Helix 68	AH5	E	278	289	Right-handed alpha
Helix 69	AH6	E	291	305	Right-handed alpha
Helix 70	AH7	E	332	341	Right-handed alpha
Helix 71	AH8	E	344	346	Right-handed 310
Helix 72	AH9	E	347	360	Right-handed alpha
Helix 73	AI1	E	362	373	Right-handed alpha
Helix 74	AI2	E	377	386	Right-handed alpha
Helix 75	AI3	F	23	37	Right-handed alpha
Helix 76	AI4	F	67	79	Right-handed alpha
Helix 77	AI5	F	81	83	Right-handed 310
Helix 78	AI6	F	84	89	Right-handed alpha
Helix 79	AI7	F	145	150	Right-handed alpha
Helix 80	AI8	F	152	159	Right-handed alpha
Helix 81	AI9	F	171	174	Right-handed 310
Helix 82	AJ1	F	175	190	Right-handed alpha
Helix 83	AJ2	F	230	239	Right-handed alpha
Helix 84	AJ3	F	253	266	Right-handed alpha
Helix 85	AJ4	F	278	289	Right-handed alpha
Helix 86	AJ5	F	294	305	Right-handed alpha
Helix 87	AJ6	F	332	341	Right-handed alpha
Helix 88	AJ7	F	344	346	Right-handed 310
Helix 89	AJ8	F	347	360	Right-handed alpha
Helix 90	AJ9	F	362	373	Right-handed alpha
Helix 91	AK1	F	377	386	Right-handed alpha

There are 12 sheets in PDB entry 6GEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	60	first strand
Strand 2	A	51	54	anti-parallel
Strand 3	A	39	45	anti-parallel
Strand 4	A	129	139	anti-parallel
Strand 5	A	114	126	anti-parallel
Strand 6	A	94	101	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	223	first strand
Strand 2	A	197	202	parallel
Strand 3	A	245	250	parallel
Strand 4	A	270	274	parallel
Strand 5	A	165	169	parallel
Strand 6	A	306	316	parallel
Strand 7	A	322	330	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	57	60	parallel
Strand 3	B	51	54	anti-parallel
Strand 4	B	41	44	anti-parallel
Strand 5	B	129	139	anti-parallel
Strand 6	B	112	126	anti-parallel
Strand 7	B	94	106	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	223	first strand
Strand 2	B	197	202	parallel
Strand 3	B	245	247	parallel
Strand 4	B	270	274	parallel
Strand 5	B	165	169	parallel
Strand 6	B	306	316	parallel
Strand 7	B	322	330	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	60	first strand
Strand 2	C	51	54	anti-parallel
Strand 3	C	41	44	anti-parallel
Strand 4	C	129	138	anti-parallel
Strand 5	C	114	126	anti-parallel
Strand 6	C	94	101	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	223	first strand
Strand 2	C	197	202	parallel
Strand 3	C	245	250	parallel
Strand 4	C	269	274	parallel
Strand 5	C	164	169	parallel
Strand 6	C	306	316	parallel
Strand 7	C	322	330	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	51	54	anti-parallel
Strand 3	D	39	44	anti-parallel
Strand 4	D	129	138	anti-parallel
Strand 5	D	115	126	anti-parallel
Strand 6	D	94	100	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	222	first strand
Strand 2	D	197	201	parallel
Strand 3	D	245	250	parallel
Strand 4	D	270	274	parallel
Strand 5	D	165	169	parallel
Strand 6	D	306	317	parallel
Strand 7	D	321	330	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	60	first strand
Strand 2	E	51	54	anti-parallel
Strand 3	E	41	44	anti-parallel
Strand 4	E	129	138	anti-parallel
Strand 5	E	111	126	anti-parallel
Strand 6	E	94	107	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	223	first strand
Strand 2	E	197	202	parallel
Strand 3	E	245	250	parallel
Strand 4	E	269	274	parallel
Strand 5	E	164	169	parallel
Strand 6	E	306	316	parallel
Strand 7	E	322	330	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	59	first strand
Strand 2	F	51	54	anti-parallel
Strand 3	F	41	44	anti-parallel
Strand 4	F	129	139	anti-parallel
Strand 5	F	112	126	anti-parallel
Strand 6	F	94	106	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	218	223	first strand
Strand 2	F	197	202	parallel
Strand 3	F	245	250	parallel
Strand 4	F	269	274	parallel
Strand 5	F	164	169	parallel
Strand 6	F	306	316	parallel
Strand 7	F	322	330	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GEF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEF