Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GEJ entry

There are 12 chains in PDB entry 6GEJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
Z
UNK 81UNK 211
A
LYS 37GLU 133
B
LYS 37GLU 133
C
ILE 21GLY 102
D
ARG 23GLY 102
E
GLN 16PRO 118
F
SER 17LEU 117
G
SER 33THR 128
H
ALA 35SER 125
I
C -77 A 76
J
T -76 G 77
M
SER 682ASN 695
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are200 helices in PDB entry 6GEJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
Z
101 129Right-handed alpha
Helix 2
AA2
Z
136 144Right-handed alpha
Helix 3
AA3
Z
198 200Right-handed 310
Helix 4
AA4
Z
201 207Right-handed alpha
Helix 5
AA5
A
44 56Right-handed alpha
Helix 6
AA6
A
63 77Right-handed alpha
Helix 7
AA7
A
88 114Right-handed alpha
Helix 8
AA8
A
120 130Right-handed alpha
Helix 9
AA9
B
44 56Right-handed alpha
Helix 10
AB1
B
63 77Right-handed alpha
Helix 11
AB2
B
88 114Right-handed alpha
Helix 12
AB3
B
120 130Right-handed alpha
Helix 13
AB4
C
25 29Right-handed 310
Helix 14
AB5
C
30 41Right-handed alpha
Helix 15
AB6
C
49 76Right-handed alpha
Helix 16
AB7
C
82 92Right-handed alpha
Helix 17
AB8
D
25 29Right-handed 310
Helix 18
AB9
D
30 41Right-handed alpha
Helix 19
AC1
D
49 76Right-handed alpha
Helix 20
AC2
D
82 92Right-handed alpha
Helix 21
AC3
E
17 22Right-handed alpha
Helix 22
AC4
E
27 38Right-handed alpha
Helix 23
AC5
E
47 74Right-handed alpha
Helix 24
AC6
E
80 91Right-handed alpha
Helix 25
AC7
E
91 98Right-handed alpha
Helix 26
AC8
F
18 22Right-handed alpha
Helix 27
AC9
F
27 38Right-handed alpha
Helix 28
AD1
F
47 74Right-handed alpha
Helix 29
AD2
F
80 91Right-handed alpha
Helix 30
AD3
F
91 98Right-handed alpha
Helix 31
AD4
G
40 52Right-handed alpha
Helix 32
AD5
G
58 87Right-handed alpha
Helix 33
AD6
G
93 105Right-handed alpha
Helix 34
AD7
G
106 126Right-handed alpha
Helix 35
AD8
H
40 52Right-handed alpha
Helix 36
AD9
H
58 87Right-handed alpha
Helix 37
AE1
H
93 105Right-handed alpha
Helix 38
AE2
H
106 125Right-handed alpha
Helix 39
AE3
M
697 712Right-handed alpha
Helix 40
AE4
M
726 742Right-handed alpha
Helix 41
AE5
M
756 767Right-handed alpha
Helix 42
AE6
M
781 787Right-handed alpha
Helix 43
AE7
M
804 809Right-handed alpha
Helix 44
AE8
M
809 814Right-handed alpha
Helix 45
AE9
M
834 842Right-handed alpha
Helix 46
AF1
M
859 871Right-handed alpha
Helix 47
AF2
M
914 925Right-handed alpha
Helix 48
AF3
M
954 971Right-handed alpha
Helix 49
AF4
M
972 975Right-handed 310
Helix 50
AF5
M
978 994Right-handed alpha
Helix 51
AF6
M
1013 1030Right-handed alpha
Helix 52
AF7
M
1046 1050Right-handed 310
Helix 53
AF8
M
1056 1065Right-handed alpha
Helix 54
AF9
M
1069 1094Right-handed alpha
Helix 55
AG1
M
1103 1133Right-handed alpha
Helix 56
AG2
M
1141 1147Right-handed alpha
Helix 57
AG3
M
1159 1164Right-handed alpha
Helix 58
AG4
M
1165 1173Right-handed alpha
Helix 59
AG5
M
1173 1181Right-handed alpha
Helix 60
AG6
M
1191 1198Right-handed alpha
Helix 61
AG7
M
1206 1220Right-handed alpha
Helix 62
AG8
M
1224 1233Right-handed alpha
Helix 63
AG9
M
1239 1244Right-handed alpha
Helix 64
AH1
M
1250 1261Right-handed alpha
Helix 65
AH2
M
1272 1286Right-handed alpha
Helix 66
AH3
M
1298 1310Right-handed alpha
Helix 67
AH4
M
1348 1356Right-handed alpha
Helix 68
AH5
M
1374 1386Right-handed alpha
Helix 69
AH6
R
43 49Right-handed 310
Helix 70
AH7
R
68 82Right-handed alpha
Helix 71
AH8
R
108 122Right-handed alpha
Helix 72
AH9
R
132 137Right-handed alpha
Helix 73
AI1
R
138 143Right-handed 310
Helix 74
AI2
R
219 235Right-handed alpha
Helix 75
AI3
R
241 253Right-handed alpha
Helix 76
AI4
R
259 266Right-handed alpha
Helix 77
AI5
R
307 313Right-handed alpha
Helix 78
AI6
R
314 317Right-handed 310
Helix 79
AI7
R
319 324Right-handed 310
Helix 80
AI8
R
329 340Right-handed alpha
Helix 81
AI9
R
345 350Right-handed alpha
Helix 82
AJ1
R
358 362Right-handed 310
Helix 83
AJ2
R
364 377Right-handed alpha
Helix 84
AJ3
R
391 406Right-handed alpha
Helix 85
AJ4
R
407 413Right-handed alpha
Helix 86
AJ5
R
415 422Right-handed alpha
Helix 87
AJ6
R
423 430Right-handed alpha
Helix 88
AJ7
S
52 61Right-handed alpha
Helix 89
AJ8
S
91 107Right-handed alpha
Helix 90
AJ9
S
115 125Right-handed alpha
Helix 91
AK1
S
127 135Right-handed alpha
Helix 92
AK2
S
168 179Right-handed alpha
Helix 93
AK3
S
180 182Right-handed 310
Helix 94
AK4
S
192 203Right-handed alpha
Helix 95
AK5
S
207 214Right-handed alpha
Helix 96
AK6
S
218 226Right-handed alpha
Helix 97
AK7
S
265 273Right-handed alpha
Helix 98
AK8
T
51 68Right-handed alpha
Helix 99
AK9
T
84 97Right-handed alpha
Helix 100
AL1
T
108 110Right-handed 310
Helix 101
AL2
T
116 129Right-handed alpha
Helix 102
AL3
T
182 193Right-handed alpha
Helix 103
AL4
T
217 222Right-handed 310
Helix 104
AL5
T
249 258Right-handed alpha
Helix 105
AL6
T
264 273Right-handed alpha
Helix 106
AL7
T
281 296Right-handed alpha
Helix 107
AL8
T
313 316Right-handed 310
Helix 108
AL9
T
317 329Right-handed alpha
Helix 109
AM1
T
356 359Right-handed 310
Helix 110
AM2
T
360 367Right-handed alpha
Helix 111
AM3
T
376 392Right-handed alpha
Helix 112
AM4
T
396 410Right-handed alpha
Helix 113
AM5
T
411 429Right-handed alpha
Helix 114
AM6
T
435 446Right-handed alpha
Helix 115
AM7
T
448 458Right-handed alpha
Helix 116
AM8
U
47 64Right-handed alpha
Helix 117
AM9
U
81 93Right-handed alpha
Helix 118
AN1
U
112 124Right-handed alpha
Helix 119
AN2
U
173 182Right-handed alpha
Helix 120
AN3
U
241 250Right-handed alpha
Helix 121
AN4
U
253 260Right-handed alpha
Helix 122
AN5
U
266 283Right-handed alpha
Helix 123
AN6
U
298 301Right-handed 310
Helix 124
AN7
U
302 314Right-handed alpha
Helix 125
AN8
U
340 343Right-handed 310
Helix 126
AN9
U
344 350Right-handed alpha
Helix 127
AO1
U
360 375Right-handed alpha
Helix 128
AO2
U
380 394Right-handed alpha
Helix 129
AO3
U
395 413Right-handed alpha
Helix 130
AO4
U
419 430Right-handed alpha
Helix 131
AO5
U
432 444Right-handed alpha
Helix 132
AO6
V
51 68Right-handed alpha
Helix 133
AO7
V
84 97Right-handed alpha
Helix 134
AO8
V
108 111Right-handed 310
Helix 135
AO9
V
116 128Right-handed alpha
Helix 136
AP1
V
182 192Right-handed alpha
Helix 137
AP2
V
217 219Right-handed 310
Helix 138
AP3
V
249 258Right-handed alpha
Helix 139
AP4
V
264 274Right-handed alpha
Helix 140
AP5
V
281 298Right-handed alpha
Helix 141
AP6
V
313 316Right-handed 310
Helix 142
AP7
V
317 328Right-handed alpha
Helix 143
AP8
V
360 366Right-handed alpha
Helix 144
AP9
V
376 391Right-handed alpha
Helix 145
AQ1
V
396 410Right-handed alpha
Helix 146
AQ2
V
411 418Right-handed alpha
Helix 147
AQ3
V
418 429Right-handed alpha
Helix 148
AQ4
V
435 446Right-handed alpha
Helix 149
AQ5
V
448 458Right-handed alpha
Helix 150
AQ6
W
47 64Right-handed alpha
Helix 151
AQ7
W
80 93Right-handed alpha
Helix 152
AQ8
W
112 125Right-handed alpha
Helix 153
AQ9
W
172 182Right-handed alpha
Helix 154
AR1
W
241 248Right-handed alpha
Helix 155
AR2
W
251 253Right-handed 310
Helix 156
AR3
W
254 260Right-handed alpha
Helix 157
AR4
W
266 283Right-handed alpha
Helix 158
AR5
W
302 313Right-handed alpha
Helix 159
AR6
W
340 343Right-handed 310
Helix 160
AR7
W
344 350Right-handed alpha
Helix 161
AR8
W
360 376Right-handed alpha
Helix 162
AR9
W
380 394Right-handed alpha
Helix 163
AS1
W
395 412Right-handed alpha
Helix 164
AS2
W
419 430Right-handed alpha
Helix 165
AS3
W
432 443Right-handed alpha
Helix 166
AS4
X
51 68Right-handed alpha
Helix 167
AS5
X
84 97Right-handed alpha
Helix 168
AS6
X
108 111Right-handed 310
Helix 169
AS7
X
116 127Right-handed alpha
Helix 170
AS8
X
184 193Right-handed alpha
Helix 171
AS9
X
217 219Right-handed 310
Helix 172
AT1
X
249 258Right-handed alpha
Helix 173
AT2
X
264 271Right-handed alpha
Helix 174
AT3
X
281 298Right-handed alpha
Helix 175
AT4
X
312 316Right-handed 310
Helix 176
AT5
X
317 328Right-handed alpha
Helix 177
AT6
X
356 359Right-handed 310
Helix 178
AT7
X
360 365Right-handed alpha
Helix 179
AT8
X
376 392Right-handed alpha
Helix 180
AT9
X
397 410Right-handed alpha
Helix 181
AU1
X
411 418Right-handed alpha
Helix 182
AU2
X
418 429Right-handed alpha
Helix 183
AU3
X
435 446Right-handed alpha
Helix 184
AU4
X
448 458Right-handed alpha
Helix 185
AU5
Y
47 64Right-handed alpha
Helix 186
AU6
Y
81 93Right-handed alpha
Helix 187
AU7
Y
112 123Right-handed alpha
Helix 188
AU8
Y
172 181Right-handed alpha
Helix 189
AU9
Y
206 209Right-handed 310
Helix 190
AV1
Y
241 250Right-handed alpha
Helix 191
AV2
Y
253 260Right-handed alpha
Helix 192
AV3
Y
266 283Right-handed alpha
Helix 193
AV4
Y
302 313Right-handed alpha
Helix 194
AV5
Y
340 343Right-handed 310
Helix 195
AV6
Y
344 350Right-handed alpha
Helix 196
AV7
Y
360 376Right-handed alpha
Helix 197
AV8
Y
382 394Right-handed alpha
Helix 198
AV9
Y
395 413Right-handed alpha
Helix 199
AW1
Y
419 430Right-handed alpha
Helix 200
AW2
Y
432 443Right-handed alpha
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There are 33 sheets in PDB entry 6GEJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Z
169 171first strand
Strand 2
Z
176 178anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
719 721first strand
Strand 2
M
930 932parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
800 802first strand
Strand 2
M
749 752parallel
Strand 3
M
820 824parallel
Strand 4
M
847 851parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
944 946first strand
Strand 2
M
1364 1366parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
949 951first strand
Strand 2
M
1369 1371parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
1335 1338first strand
Strand 2
M
1265 1269parallel
Strand 3
M
1316 1320parallel
Strand 4
M
1289 1291parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
127 130first strand
Strand 2
R
98 102parallel
Strand 3
R
6 9parallel
Strand 4
R
14 19anti-parallel
Strand 5
R
26 29anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
32 35first strand
Strand 2
R
55 58anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
147 151first strand
Strand 2
R
384 388anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
353 356first strand
Strand 2
R
188 192parallel
Strand 3
R
198 203anti-parallel
Strand 4
R
214 216anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
R
286 289first strand
Strand 2
R
272 275anti-parallel
Strand 3
R
303 306anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
369 372first strand
Strand 2
T
74 79parallel
Strand 3
T
335 340parallel
Strand 4
T
307 311parallel
Strand 5
T
102 106parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
246 248first strand
Strand 2
T
130 133anti-parallel
Strand 3
T
301 304anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
238 243first strand
Strand 2
T
135 143anti-parallel
Strand 3
T
198 203anti-parallel
Strand 4
T
209 214anti-parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
147 150first strand
Strand 2
T
165 171anti-parallel
Strand 3
T
176 181anti-parallel
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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
351 355first strand
Strand 2
U
70 74parallel
Strand 3
U
320 325parallel
Strand 4
U
292 296parallel
Strand 5
U
98 102parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
286 290first strand
Strand 2
U
125 136anti-parallel
Strand 3
U
230 240anti-parallel
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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
166 170first strand
Strand 2
U
156 161anti-parallel
Strand 3
U
135 145anti-parallel
Strand 4
U
188 193anti-parallel
Strand 5
U
199 204anti-parallel
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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
367 371first strand
Strand 2
V
74 78parallel
Strand 3
V
335 340parallel
Strand 4
V
307 311parallel
Strand 5
V
102 106parallel
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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
246 248first strand
Strand 2
V
130 132anti-parallel
Strand 3
V
302 304anti-parallel
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There are 4 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
238 243first strand
Strand 2
V
135 143anti-parallel
Strand 3
V
198 203anti-parallel
Strand 4
V
209 214anti-parallel
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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
147 149first strand
Strand 2
V
166 168anti-parallel
Strand 3
V
179 181anti-parallel
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There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
V
344 346first strand
Strand 2
V
354 356anti-parallel
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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
351 354first strand
Strand 2
W
70 74parallel
Strand 3
W
320 325parallel
Strand 4
W
292 296parallel
Strand 5
W
98 102parallel
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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
230 240first strand
Strand 2
W
126 136anti-parallel
Strand 3
W
286 289anti-parallel
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There are 5 strands in Z sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
166 171first strand
Strand 2
W
155 161anti-parallel
Strand 3
W
135 146anti-parallel
Strand 4
W
188 193anti-parallel
Strand 5
W
199 204anti-parallel
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There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
367 371first strand
Strand 2
X
74 78parallel
Strand 3
X
335 340parallel
Strand 4
X
307 311parallel
Strand 5
X
102 106parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
238 248first strand
Strand 2
X
130 140anti-parallel
Strand 3
X
301 304anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
139 142first strand
Strand 2
X
198 203anti-parallel
Strand 3
X
210 214anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
175 182first strand
Strand 2
X
163 172anti-parallel
Strand 3
X
147 151anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
353 355first strand
Strand 2
Y
70 74parallel
Strand 3
Y
320 325parallel
Strand 4
Y
292 296parallel
Strand 5
Y
98 102parallel
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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
230 240first strand
Strand 2
Y
126 136anti-parallel
Strand 3
Y
286 289anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
166 170first strand
Strand 2
Y
157 161anti-parallel
Strand 3
Y
135 143anti-parallel
Strand 4
Y
188 193anti-parallel
Strand 5
Y
199 204anti-parallel
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