Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GEL entry

There are 6 chains in PDB entry 6GEL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5LEU 65
A
 VAL 69LEU 447
A
 LEU 451GLU 555
B
 GLY 5LEU 65
B
 VAL 69LEU 447
B
 LEU 451GLU 555
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6GEL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 61Right-handed 310
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
76 82Right-handed 310
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
157 160Right-handed 310
Helix 6
AA6
A
231 235Right-handed 310
Helix 7
AA7
A
236 248Right-handed alpha
Helix 8
AA8
A
257 265Right-handed alpha
Helix 9
AA9
A
272 284Right-handed alpha
Helix 10
AB1
A
292 303Right-handed alpha
Helix 11
AB2
A
305 311Right-handed alpha
Helix 12
AB3
A
386 392Right-handed 310
Helix 13
AB4
A
439 444Right-handed 310
Helix 14
AB5
A
451 455Right-handed 310
Helix 15
AB6
A
458 464Right-handed 310
Helix 16
AB7
A
465 470Right-handed alpha
Helix 17
AB8
A
539 542Right-handed 310
Helix 18
AB9
B
5 10Right-handed 310
Helix 19
AC1
B
57 61Right-handed 310
Helix 20
AC2
B
69 73Right-handed 310
Helix 21
AC3
B
76 82Right-handed 310
Helix 22
AC4
B
83 88Right-handed alpha
Helix 23
AC5
B
157 160Right-handed 310
Helix 24
AC6
B
231 235Right-handed 310
Helix 25
AC7
B
236 248Right-handed alpha
Helix 26
AC8
B
257 265Right-handed alpha
Helix 27
AC9
B
266 268Right-handed 310
Helix 28
AD1
B
272 284Right-handed alpha
Helix 29
AD2
B
292 303Right-handed alpha
Helix 30
AD3
B
305 312Right-handed alpha
Helix 31
AD4
B
386 392Right-handed 310
Helix 32
AD5
B
439 444Right-handed 310
Helix 33
AD6
B
451 455Right-handed 310
Helix 34
AD7
B
458 464Right-handed 310
Helix 35
AD8
B
465 470Right-handed alpha
Helix 36
AD9
B
539 542Right-handed 310
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There are 6 sheets in PDB entry 6GEL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 23first strand
Strand 2
A
26 37anti-parallel
Strand 3
A
42 49anti-parallel
Strand 4
A
218 228anti-parallel
Strand 5
A
200 209anti-parallel
Strand 6
A
146 156anti-parallel
Strand 7
A
161 171anti-parallel
Strand 8
A
177 188anti-parallel
Strand 9
A
93 101anti-parallel
Strand 10
A
106 116anti-parallel
Strand 11
A
119 129anti-parallel
Strand 12
A
12 23parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 256first strand
Strand 2
A
290 291anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 325first strand
Strand 2
A
475 483anti-parallel
Strand 3
A
488 498anti-parallel
Strand 4
A
501 511anti-parallel
Strand 5
A
394 405parallel
Strand 6
A
408 419anti-parallel
Strand 7
A
424 431anti-parallel
Strand 8
A
355 365anti-parallel
Strand 9
A
337 346anti-parallel
Strand 10
A
531 538anti-parallel
Strand 11
A
543 553anti-parallel
Strand 12
A
314 325anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 23first strand
Strand 2
B
26 37anti-parallel
Strand 3
B
42 49anti-parallel
Strand 4
B
218 228anti-parallel
Strand 5
B
200 209anti-parallel
Strand 6
B
147 156anti-parallel
Strand 7
B
161 170anti-parallel
Strand 8
B
178 188anti-parallel
Strand 9
B
93 101anti-parallel
Strand 10
B
106 115anti-parallel
Strand 11
B
120 129anti-parallel
Strand 12
B
12 23parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 256first strand
Strand 2
B
290 291anti-parallel
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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 325first strand
Strand 2
B
475 483anti-parallel
Strand 3
B
488 498anti-parallel
Strand 4
B
501 511anti-parallel
Strand 5
B
394 405parallel
Strand 6
B
408 419anti-parallel
Strand 7
B
424 431anti-parallel
Strand 8
B
355 365anti-parallel
Strand 9
B
337 346anti-parallel
Strand 10
B
531 538anti-parallel
Strand 11
B
543 553anti-parallel
Strand 12
B
314 325anti-parallel
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