Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GEP entry

There is 1 chain in PDB entry 6GEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 81ASP 570
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6GEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
93 106Right-handed alpha
Helix 2
2
A
132 140Right-handed alpha
Helix 3
3
A
166 183Right-handed 310
Helix 4
3T
A
229 233Right-handed 310
Helix 5
4
A
281 297Right-handed alpha
Helix 6
5A
A
306 315Right-handed alpha
Helix 7
5B
A
316 328Right-handed alpha
Helix 8
1'
A
375 386Right-handed alpha
Helix 9
2'
A
407 418Right-handed alpha
Helix 10
A
A
426 430Right-handed alpha
Helix 11
3'
A
450 465Right-handed alpha
Helix 12
3T'
A
485 489Right-handed 310
Helix 13
4'
A
524 542Right-handed alpha
Helix 14
5'
A
547 556Right-handed alpha
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There are 4 sheets in PDB entry 6GEP. Click on sheet of interest to get list of strands forming it: 1, 1', 2, 3,

There are 4 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 85first strand
Strand 2
A
119 126anti-parallel
Strand 3
A
111 115anti-parallel
Strand 4
A
365 367anti-parallel
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There are 5 strands in 1' sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 351first strand
Strand 2
A
354 361anti-parallel
Strand 3
A
397 404anti-parallel
Strand 4
A
389 393anti-parallel
Strand 5
A
89 91anti-parallel
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There are 5 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
215 221parallel
Strand 3
A
234 242parallel
Strand 4
A
245 254anti-parallel
Strand 5
A
272 279anti-parallel
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There are 5 strands in 3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 434first strand
Strand 2
A
473 476parallel
Strand 3
A
490 497parallel
Strand 4
A
500 506anti-parallel
Strand 5
A
516 523anti-parallel
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