Analysis of interatomic Contacts of Structural Units in PDB entry:
6GES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GES entry

There are 2 chains in PDB entry 6GES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 25GLY 374
B
 PRO 25GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6GES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
78 93Right-handed alpha
Helix 2
AA2
A
129 136Right-handed alpha
Helix 3
AA3
A
139 160Right-handed alpha
Helix 4
AA4
A
168 170Right-handed 310
Helix 5
AA5
A
192 196Right-handed 310
Helix 6
AA6
A
207 211Right-handed 310
Helix 7
AA7
A
212 216Right-handed 310
Helix 8
AA8
A
224 241Right-handed alpha
Helix 9
AA9
A
249 262Right-handed alpha
Helix 10
AB1
A
265 271Right-handed alpha
Helix 11
AB2
A
274 283Right-handed alpha
Helix 12
AB3
A
291 296Right-handed alpha
Helix 13
AB4
A
300 311Right-handed alpha
Helix 14
AB5
A
314 318Right-handed 310
Helix 15
AB6
A
320 326Right-handed alpha
Helix 16
AB7
A
327 331Right-handed 310
Helix 17
AB8
A
335 339Right-handed 310
Helix 18
AB9
A
349 355Right-handed 310
Helix 19
AC1
A
356 368Right-handed alpha
Helix 20
AC2
A
369 372Right-handed 310
Helix 21
AC3
B
78 93Right-handed alpha
Helix 22
AC4
B
129 136Right-handed alpha
Helix 23
AC5
B
139 160Right-handed alpha
Helix 24
AC6
B
168 170Right-handed 310
Helix 25
AC7
B
192 196Right-handed 310
Helix 26
AC8
B
207 211Right-handed 310
Helix 27
AC9
B
212 216Right-handed 310
Helix 28
AD1
B
224 241Right-handed alpha
Helix 29
AD2
B
249 262Right-handed alpha
Helix 30
AD3
B
265 270Right-handed alpha
Helix 31
AD4
B
274 283Right-handed alpha
Helix 32
AD5
B
291 296Right-handed alpha
Helix 33
AD6
B
300 311Right-handed alpha
Helix 34
AD7
B
314 318Right-handed 310
Helix 35
AD8
B
320 326Right-handed alpha
Helix 36
AD9
B
327 331Right-handed 310
Helix 37
AE1
B
335 339Right-handed 310
Helix 38
AE2
B
349 355Right-handed 310
Helix 39
AE3
B
356 369Right-handed alpha
Helix 40
AE4
B
370 372Right-handed 310
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There are 8 sheets in PDB entry 6GES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 31first strand
Strand 2
A
34 36anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 51first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
66 73anti-parallel
Strand 4
A
118 123anti-parallel
Strand 5
A
105 107anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
172 174anti-parallel
Strand 3
A
180 182anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 163first strand
Strand 2
A
189 190anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 31first strand
Strand 2
B
34 36anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 51first strand
Strand 2
B
54 61anti-parallel
Strand 3
B
66 73anti-parallel
Strand 4
B
118 123anti-parallel
Strand 5
B
105 107anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 128first strand
Strand 2
B
172 174anti-parallel
Strand 3
B
180 182anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
189 190anti-parallel
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