Analysis of interatomic Contacts of Structural Units in PDB entry:
6GEU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GEU entry

There is 1 chain in PDB entry 6GEU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14PRO 323
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 6GEU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 43Right-handed alpha
Helix 2
AA2
A
103 115Right-handed alpha
Helix 3
AA3
A
162 165Right-handed 310
Helix 4
AA4
A
174 178Right-handed 310
Helix 5
AA5
A
186 198Right-handed alpha
Helix 6
AA6
A
217 221Right-handed 310
Helix 7
AA7
A
233 244Right-handed alpha
Helix 8
AA8
A
296 298Right-handed 310
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There are 3 sheets in PDB entry 6GEU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
154 158anti-parallel
Strand 3
A
167 171anti-parallel
Strand 4
A
129 135anti-parallel
Strand 5
A
19 23anti-parallel
Strand 6
A
182 184parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 71first strand
Strand 2
A
77 87anti-parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
27 33anti-parallel
Strand 5
A
121 124anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 255first strand
Strand 2
A
288 294anti-parallel
Strand 3
A
277 285anti-parallel
Strand 4
A
269 272anti-parallel
Strand 5
A
302 304anti-parallel
Strand 6
A
313 316anti-parallel
Strand 7
A
248 255anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il