Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFA entry

There is 1 chain in PDB entry 6GFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2CYS 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 6GFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 54Right-handed alpha
Helix 2
AA2
A
58 60Right-handed 310
Helix 3
AA3
A
66 70Right-handed 310
Helix 4
AA4
A
76 84Right-handed alpha
Helix 5
AA5
A
113 133Right-handed alpha
Helix 6
AA6
A
148 163Right-handed alpha
Helix 7
AA7
A
172 184Right-handed alpha
Helix 8
AA8
A
231 252Right-handed alpha
Helix 9
AA9
A
254 257Right-handed 310
Helix 10
AB1
A
258 276Right-handed alpha
Helix 11
AB2
A
301 309Right-handed alpha
Helix 12
AB3
A
309 316Right-handed alpha
Helix 13
AB4
A
316 328Right-handed alpha
Helix 14
AB5
A
330 334Right-handed 310
Helix 15
AB6
A
342 345Right-handed 310
Helix 16
AB7
A
346 358Right-handed alpha
Helix 17
AB8
A
369 379Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6GFA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
11 17anti-parallel
Strand 3
A
3 7anti-parallel
Strand 4
A
138 143parallel
Strand 5
A
165 171parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
62 64anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 92first strand
Strand 2
A
98 103anti-parallel
Strand 3
A
108 112anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
218 227first strand
Strand 2
A
207 215anti-parallel
Strand 3
A
195 202anti-parallel
Strand 4
A
336 340parallel
Strand 5
A
361 362parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 291first strand
Strand 2
A
294 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il