Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFB entry

There are 2 chains in PDB entry 6GFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 129PHE 247
B
 SER 129SER 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 6GFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
138 150Right-handed alpha
Helix 2
AA2
A
172 177Right-handed alpha
Helix 3
AA3
A
178 186Right-handed 310
Helix 4
AA4
A
198 203Right-handed 310
Helix 5
AA5
A
204 215Right-handed alpha
Helix 6
AA6
A
223 235Right-handed alpha
Helix 7
AA7
A
236 247Right-handed alpha
Helix 8
AA8
B
138 150Right-handed alpha
Helix 9
AA9
B
172 177Right-handed alpha
Helix 10
AB1
B
178 186Right-handed 310
Helix 11
AB2
B
198 203Right-handed 310
Helix 12
AB3
B
204 215Right-handed alpha
Helix 13
AB4
B
223 235Right-handed alpha
Helix 14
AB5
B
236 251Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6GFB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
B
216 219anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 171first strand
Strand 2
A
155 161anti-parallel
Strand 3
A
191 196parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 219first strand
Strand 2
B
131 134anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 171first strand
Strand 2
B
155 161anti-parallel
Strand 3
B
191 196parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il