Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GFC entry

There are 6 chains in PDB entry 6GFC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 129	PHE 247
B	THR 127	ASP 254
C	SER 129	PHE 247
D	ARG 128	LEU 250
F	ARG 128	PHE 247
G	ARG 128	SER 251

There are 44 helices in PDB entry 6GFC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	138	150	Right-handed alpha
Helix 2	AA2	A	172	177	Right-handed alpha
Helix 3	AA3	A	178	186	Right-handed 310
Helix 4	AA4	A	198	203	Right-handed 310
Helix 5	AA5	A	204	215	Right-handed alpha
Helix 6	AA6	A	223	234	Right-handed alpha
Helix 7	AA7	A	236	246	Right-handed alpha
Helix 8	AA8	B	138	150	Right-handed alpha
Helix 9	AA9	B	172	177	Right-handed alpha
Helix 10	AB1	B	182	186	Right-handed 310
Helix 11	AB2	B	201	203	Right-handed 310
Helix 12	AB3	B	204	215	Right-handed alpha
Helix 13	AB4	B	223	234	Right-handed alpha
Helix 14	AB5	B	236	251	Right-handed alpha
Helix 15	AB6	C	138	150	Right-handed alpha
Helix 16	AB7	C	172	177	Right-handed alpha
Helix 17	AB8	C	178	179	Right-handed 310
Helix 18	AB9	C	180	186	Right-handed 310
Helix 19	AC1	C	201	203	Right-handed 310
Helix 20	AC2	C	204	215	Right-handed alpha
Helix 21	AC3	C	223	234	Right-handed alpha
Helix 22	AC4	C	236	247	Right-handed alpha
Helix 23	AC5	D	138	150	Right-handed alpha
Helix 24	AC6	D	172	177	Right-handed alpha
Helix 25	AC7	D	182	186	Right-handed 310
Helix 26	AC8	D	201	203	Right-handed 310
Helix 27	AC9	D	204	215	Right-handed alpha
Helix 28	AD1	D	223	234	Right-handed alpha
Helix 29	AD2	D	236	247	Right-handed alpha
Helix 30	AD3	D	248	250	Right-handed 310
Helix 31	AD4	F	138	150	Right-handed alpha
Helix 32	AD5	F	172	177	Right-handed alpha
Helix 33	AD6	F	182	186	Right-handed 310
Helix 34	AD7	F	201	203	Right-handed 310
Helix 35	AD8	F	204	215	Right-handed alpha
Helix 36	AD9	F	223	234	Right-handed alpha
Helix 37	AE1	F	236	246	Right-handed alpha
Helix 38	AE2	G	138	150	Right-handed alpha
Helix 39	AE3	G	172	177	Right-handed alpha
Helix 40	AE4	G	182	186	Right-handed 310
Helix 41	AE5	G	201	203	Right-handed 310
Helix 42	AE6	G	204	215	Right-handed alpha
Helix 43	AE7	G	223	234	Right-handed alpha
Helix 44	AE8	G	236	247	Right-handed alpha

There are 10 sheets in PDB entry 6GFC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	134	first strand
Strand 2	B	216	220	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	171	first strand
Strand 2	A	155	160	anti-parallel
Strand 3	A	192	196	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	220	first strand
Strand 2	B	130	134	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	165	171	first strand
Strand 2	B	155	160	anti-parallel
Strand 3	B	192	196	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	134	first strand
Strand 2	D	216	219	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	171	first strand
Strand 2	C	155	160	anti-parallel
Strand 3	C	192	196	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	219	first strand
Strand 2	D	129	134	anti-parallel
Strand 3	G	129	134	anti-parallel
Strand 4	F	216	220	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	171	first strand
Strand 2	D	155	160	anti-parallel
Strand 3	D	192	196	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	131	134	first strand
Strand 2	G	216	219	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	171	first strand
Strand 2	G	155	160	anti-parallel
Strand 3	G	192	196	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GFC

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFC