Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GFE entry

There are 4 chains in PDB entry 6GFE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	SER 444
K	GLN 1	SER 444
L	ASP 1	CYS 214
M	ASP 1	CYS 214

There are 26 helices in PDB entry 6GFE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	83	87	Right-handed 310
Helix 2	AA2	H	160	162	Right-handed 310
Helix 3	AA3	H	191	195	Right-handed 310
Helix 4	AA4	H	205	208	Right-handed 310
Helix 5	AA5	H	246	252	Right-handed alpha
Helix 6	AA6	H	309	315	Right-handed alpha
Helix 7	AA7	H	354	360	Right-handed 310
Helix 8	AA8	H	414	419	Right-handed alpha
Helix 9	AA9	H	432	436	Right-handed 310
Helix 10	AB1	K	83	87	Right-handed 310
Helix 11	AB2	K	160	162	Right-handed 310
Helix 12	AB3	K	191	195	Right-handed 310
Helix 13	AB4	K	205	208	Right-handed 310
Helix 14	AB5	K	246	252	Right-handed alpha
Helix 15	AB6	K	309	315	Right-handed alpha
Helix 16	AB7	K	354	360	Right-handed 310
Helix 17	AB8	K	414	419	Right-handed alpha
Helix 18	AB9	K	432	436	Right-handed 310
Helix 19	AC1	L	29	31	Right-handed 310
Helix 20	AC2	L	79	83	Right-handed 310
Helix 21	AC3	L	121	127	Right-handed alpha
Helix 22	AC4	L	183	188	Right-handed alpha
Helix 23	AC5	M	29	31	Right-handed 310
Helix 24	AC6	M	79	83	Right-handed 310
Helix 25	AC7	M	121	127	Right-handed alpha
Helix 26	AC8	M	183	188	Right-handed alpha

There are 34 sheets in PDB entry 6GFE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	52	anti-parallel
Strand 6	H	55	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	124	128	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	180	189	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	199	204	anti-parallel
Strand 3	H	209	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	239	243	first strand
Strand 2	H	258	266	anti-parallel
Strand 3	H	300	307	anti-parallel
Strand 4	H	288	289	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	239	243	first strand
Strand 2	H	258	266	anti-parallel
Strand 3	H	300	307	anti-parallel
Strand 4	H	293	294	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	282	284	first strand
Strand 2	H	274	279	anti-parallel
Strand 3	H	319	324	anti-parallel
Strand 4	H	332	336	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	351	first strand
Strand 2	H	362	372	anti-parallel
Strand 3	H	404	413	anti-parallel
Strand 4	H	391	393	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	347	351	first strand
Strand 2	H	362	372	anti-parallel
Strand 3	H	404	413	anti-parallel
Strand 4	H	397	398	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	386	388	first strand
Strand 2	H	378	383	anti-parallel
Strand 3	H	423	428	anti-parallel
Strand 4	H	437	441	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	96	anti-parallel
Strand 4	K	35	40	anti-parallel
Strand 5	K	44	52	anti-parallel
Strand 6	K	55	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	107	111	parallel
Strand 3	K	88	96	anti-parallel
Strand 4	K	100	103	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	128	first strand
Strand 2	K	139	149	anti-parallel
Strand 3	K	180	189	anti-parallel
Strand 4	K	167	169	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	124	128	first strand
Strand 2	K	139	149	anti-parallel
Strand 3	K	180	189	anti-parallel
Strand 4	K	173	174	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	158	first strand
Strand 2	K	199	204	anti-parallel
Strand 3	K	209	214	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	239	243	first strand
Strand 2	K	258	266	anti-parallel
Strand 3	K	300	307	anti-parallel
Strand 4	K	288	289	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	239	243	first strand
Strand 2	K	258	266	anti-parallel
Strand 3	K	300	307	anti-parallel
Strand 4	K	293	294	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	282	284	first strand
Strand 2	K	273	279	anti-parallel
Strand 3	K	319	325	anti-parallel
Strand 4	K	332	336	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	347	351	first strand
Strand 2	K	362	372	anti-parallel
Strand 3	K	404	413	anti-parallel
Strand 4	K	391	393	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	347	351	first strand
Strand 2	K	362	372	anti-parallel
Strand 3	K	404	413	anti-parallel
Strand 4	K	397	398	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	386	388	first strand
Strand 2	K	378	383	anti-parallel
Strand 3	K	423	428	anti-parallel
Strand 4	K	437	441	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	28	anti-parallel
Strand 3	L	62	75	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	129	139	anti-parallel
Strand 3	L	173	182	anti-parallel
Strand 4	L	159	163	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	154	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	205	210	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	19	28	anti-parallel
Strand 3	M	62	75	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	84	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	45	49	anti-parallel
Strand 6	M	53	54	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	84	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	173	182	anti-parallel
Strand 4	M	159	163	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	154	first strand
Strand 2	M	145	150	anti-parallel
Strand 3	M	191	197	anti-parallel
Strand 4	M	205	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GFE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFE