Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GFF entry

There are 9 chains in PDB entry 6GFF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 30	GLU 266
B	ALA 279	SER 390
C	THR 32	SER 274
D	LEU 280	SER 390
E	LEU 30	GLN 269
F	ALA 279	SER 390
G	THR 32	HIS 270
H	THR 282	SER 390
I	HIS 20	LEU 131

There are 64 helices in PDB entry 6GFF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	57	Right-handed alpha
Helix 2	AA2	A	74	86	Right-handed alpha
Helix 3	AA3	A	136	144	Right-handed alpha
Helix 4	AA4	A	146	148	Right-handed 310
Helix 5	AA5	A	200	209	Right-handed alpha
Helix 6	AA6	B	282	286	Right-handed alpha
Helix 7	AA7	B	336	346	Right-handed 310
Helix 8	AA8	C	37	57	Right-handed alpha
Helix 9	AA9	C	74	86	Right-handed alpha
Helix 10	AB1	C	99	103	Right-handed 310
Helix 11	AB2	C	119	124	Right-handed alpha
Helix 12	AB3	C	137	144	Right-handed alpha
Helix 13	AB4	C	146	148	Right-handed 310
Helix 14	AB5	C	200	210	Right-handed alpha
Helix 15	AB6	C	264	268	Right-handed 310
Helix 16	AB7	D	281	286	Right-handed alpha
Helix 17	AB8	D	336	339	Right-handed 310
Helix 18	AB9	D	340	347	Right-handed alpha
Helix 19	AC1	E	37	57	Right-handed alpha
Helix 20	AC2	E	74	86	Right-handed alpha
Helix 21	AC3	E	119	124	Right-handed alpha
Helix 22	AC4	E	137	144	Right-handed alpha
Helix 23	AC5	E	146	148	Right-handed 310
Helix 24	AC6	E	200	210	Right-handed alpha
Helix 25	AC7	E	264	268	Right-handed 310
Helix 26	AC8	F	282	286	Right-handed alpha
Helix 27	AC9	F	338	346	Right-handed 310
Helix 28	AD1	G	37	57	Right-handed alpha
Helix 29	AD2	G	74	86	Right-handed alpha
Helix 30	AD3	G	99	103	Right-handed 310
Helix 31	AD4	G	119	124	Right-handed alpha
Helix 32	AD5	G	137	144	Right-handed alpha
Helix 33	AD6	G	146	148	Right-handed 310
Helix 34	AD7	G	200	210	Right-handed alpha
Helix 35	AD8	G	264	268	Right-handed 310
Helix 36	AD9	H	336	339	Right-handed 310
Helix 37	AE1	H	340	347	Right-handed alpha
Helix 38	AE2	I	65	70	Right-handed alpha
Helix 39	AE3	I	92	96	Right-handed 310
Helix 40	AE4	I	108	110	Right-handed 310
Helix 41	AE5	I	111	116	Right-handed alpha
Helix 42	AE6	I	139	145	Right-handed alpha
Helix 43	AE7	I	260	264	Right-handed 310
Helix 44	AE8	I	331	338	Right-handed alpha
Helix 45	AE9	I	509	513	Right-handed 310
Helix 46	AF1	I	579	585	Right-handed alpha
Helix 47	AF2	J	65	70	Right-handed alpha
Helix 48	AF3	J	92	96	Right-handed 310
Helix 49	AF4	J	108	110	Right-handed 310
Helix 50	AF5	J	111	116	Right-handed alpha
Helix 51	AF6	J	139	145	Right-handed alpha
Helix 52	AF7	J	260	264	Right-handed 310
Helix 53	AF8	J	331	338	Right-handed alpha
Helix 54	AF9	J	405	409	Right-handed 310
Helix 55	AG1	J	509	513	Right-handed 310
Helix 56	AG2	K	99	103	Right-handed 310
Helix 57	AG3	K	141	146	Right-handed alpha
Helix 58	AG4	K	203	207	Right-handed alpha
Helix 59	AG5	L	92	94	Right-handed 310
Helix 60	AG6	L	105	109	Right-handed 310
Helix 61	AG7	L	183	185	Right-handed 310
Helix 62	AG8	M	99	103	Right-handed 310
Helix 63	AG9	N	92	94	Right-handed 310
Helix 64	AH1	N	105	109	Right-handed 310

There are 48 sheets in PDB entry 6GFF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	I	211	214	anti-parallel
Strand 3	I	232	233	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	199	first strand
Strand 2	A	150	159	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	D	373	389	anti-parallel
Strand 6	D	356	370	anti-parallel
Strand 7	D	311	313	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	216	221	anti-parallel
Strand 3	A	166	171	anti-parallel
Strand 4	A	183	187	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	373	389	anti-parallel
Strand 3	B	356	370	anti-parallel
Strand 4	B	311	313	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	373	389	anti-parallel
Strand 3	C	106	112	anti-parallel
Strand 4	C	257	262	anti-parallel
Strand 5	C	150	159	anti-parallel
Strand 6	C	194	199	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	296	first strand
Strand 2	B	321	323	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	301	first strand
Strand 2	B	316	318	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	136	first strand
Strand 2	C	214	221	anti-parallel
Strand 3	C	166	173	anti-parallel
Strand 4	C	179	187	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	296	first strand
Strand 2	D	321	323	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	301	first strand
Strand 2	D	316	317	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	31	32	first strand
Strand 2	J	211	214	anti-parallel
Strand 3	J	232	233	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	194	199	first strand
Strand 2	E	150	159	anti-parallel
Strand 3	E	257	262	anti-parallel
Strand 4	E	106	112	anti-parallel
Strand 5	H	373	389	anti-parallel
Strand 6	H	356	370	anti-parallel
Strand 7	H	311	313	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	130	136	first strand
Strand 2	E	214	221	anti-parallel
Strand 3	E	166	173	anti-parallel
Strand 4	E	179	187	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	280	281	first strand
Strand 2	F	373	389	anti-parallel
Strand 3	F	356	370	anti-parallel
Strand 4	F	311	313	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	280	281	first strand
Strand 2	F	373	389	anti-parallel
Strand 3	G	106	112	anti-parallel
Strand 4	G	257	262	anti-parallel
Strand 5	G	150	159	anti-parallel
Strand 6	G	194	199	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	294	296	first strand
Strand 2	F	321	323	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	299	301	first strand
Strand 2	F	316	318	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	136	first strand
Strand 2	G	214	221	anti-parallel
Strand 3	G	166	172	anti-parallel
Strand 4	G	180	187	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	296	first strand
Strand 2	H	321	323	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	299	301	first strand
Strand 2	H	316	318	anti-parallel

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There are 23 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	32	34	anti-parallel
Strand 3	I	53	55	parallel
Strand 4	I	77	79	parallel
Strand 5	I	101	103	parallel
Strand 6	I	128	130	parallel
Strand 7	I	153	155	parallel
Strand 8	I	177	179	parallel
Strand 9	I	201	203	parallel
Strand 10	I	222	224	parallel
Strand 11	I	247	249	parallel
Strand 12	I	269	271	parallel
Strand 13	I	319	321	parallel
Strand 14	I	343	345	parallel
Strand 15	I	367	369	parallel
Strand 16	I	390	392	parallel
Strand 17	I	414	416	parallel
Strand 18	I	447	449	parallel
Strand 19	I	470	472	parallel
Strand 20	I	495	497	parallel
Strand 21	I	518	520	parallel
Strand 22	I	540	542	parallel
Strand 23	I	565	567	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	64	first strand
Strand 2	I	87	88	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	163	164	first strand
Strand 2	I	187	188	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	291	292	first strand
Strand 2	I	297	298	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	353	356	first strand
Strand 2	I	377	380	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	457	458	first strand
Strand 2	I	480	481	parallel

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There are 22 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	27	29	first strand
Strand 2	J	32	34	anti-parallel
Strand 3	J	53	55	parallel
Strand 4	J	77	79	parallel
Strand 5	J	101	103	parallel
Strand 6	J	128	130	parallel
Strand 7	J	153	155	parallel
Strand 8	J	177	179	parallel
Strand 9	J	201	203	parallel
Strand 10	J	222	224	parallel
Strand 11	J	247	249	parallel
Strand 12	J	269	271	parallel
Strand 13	J	319	321	parallel
Strand 14	J	343	345	parallel
Strand 15	J	367	369	parallel
Strand 16	J	390	392	parallel
Strand 17	J	414	416	parallel
Strand 18	J	447	449	parallel
Strand 19	J	470	472	parallel
Strand 20	J	495	497	parallel
Strand 21	J	518	520	parallel
Strand 22	J	540	542	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	63	64	first strand
Strand 2	J	87	88	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	163	164	first strand
Strand 2	J	187	188	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	291	292	first strand
Strand 2	J	297	298	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	353	356	first strand
Strand 2	J	377	380	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	457	458	first strand
Strand 2	J	480	481	parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	24	25	first strand
Strand 2	K	39	45	anti-parallel
Strand 3	K	90	95	anti-parallel
Strand 4	K	82	87	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	32	first strand
Strand 2	K	122	125	parallel
Strand 3	K	105	110	anti-parallel
Strand 4	K	53	58	anti-parallel
Strand 5	K	65	68	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	30	32	first strand
Strand 2	K	122	125	parallel
Strand 3	K	105	110	anti-parallel
Strand 4	K	117	118	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	134	138	first strand
Strand 2	K	149	159	anti-parallel
Strand 3	K	193	202	anti-parallel
Strand 4	K	179	183	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	173	175	first strand
Strand 2	K	165	170	anti-parallel
Strand 3	K	211	217	anti-parallel
Strand 4	K	228	230	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	22	26	first strand
Strand 2	L	37	44	anti-parallel
Strand 3	L	96	101	anti-parallel
Strand 4	L	87	91	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	134	138	parallel
Strand 3	L	110	117	anti-parallel
Strand 4	L	53	58	anti-parallel
Strand 5	L	65	70	anti-parallel
Strand 6	L	76	78	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	134	138	parallel
Strand 3	L	110	117	anti-parallel
Strand 4	L	127	130	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	151	first strand
Strand 2	L	162	172	anti-parallel
Strand 3	L	202	211	anti-parallel
Strand 4	L	190	192	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	147	151	first strand
Strand 2	L	162	172	anti-parallel
Strand 3	L	202	211	anti-parallel
Strand 4	L	196	197	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	178	181	first strand
Strand 2	L	222	226	anti-parallel
Strand 3	L	231	233	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	24	25	first strand
Strand 2	M	39	45	anti-parallel
Strand 3	M	90	95	anti-parallel
Strand 4	M	82	86	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	73	74	first strand
Strand 2	M	65	69	anti-parallel
Strand 3	M	53	58	anti-parallel
Strand 4	M	105	110	anti-parallel
Strand 5	M	117	118	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	22	26	first strand
Strand 2	N	37	44	anti-parallel
Strand 3	N	96	101	anti-parallel
Strand 4	N	87	91	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	76	78	first strand
Strand 2	N	65	70	anti-parallel
Strand 3	N	53	58	anti-parallel
Strand 4	N	110	117	anti-parallel
Strand 5	N	127	130	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	76	78	first strand
Strand 2	N	65	70	anti-parallel
Strand 3	N	53	58	anti-parallel
Strand 4	N	110	117	anti-parallel
Strand 5	N	134	136	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GFF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFF