Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFG entry

There are 2 chains in PDB entry 6GFG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU -6GLU 437
A
 GLU -6GLU 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6GFG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 11Right-handed 310
Helix 2
AA2
B
62 69Right-handed alpha
Helix 3
AA3
B
72 77Right-handed alpha
Helix 4
AA4
B
80 92Right-handed alpha
Helix 5
AA5
B
92 98Right-handed alpha
Helix 6
AA6
B
99 102Right-handed 310
Helix 7
AA7
B
111 123Right-handed alpha
Helix 8
AA8
B
127 133Right-handed alpha
Helix 9
AA9
B
184 189Right-handed 310
Helix 10
AB1
B
191 203Right-handed alpha
Helix 11
AB2
B
213 218Right-handed alpha
Helix 12
AB3
B
221 235Right-handed alpha
Helix 13
AB4
B
261 270Right-handed alpha
Helix 14
AB5
B
282 299Right-handed alpha
Helix 15
AB6
B
299 309Right-handed alpha
Helix 16
AB7
B
313 326Right-handed alpha
Helix 17
AB8
B
343 347Right-handed alpha
Helix 18
AB9
B
349 369Right-handed alpha
Helix 19
AC1
B
414 436Right-handed alpha
Helix 20
AC2
A
9 11Right-handed 310
Helix 21
AC3
A
62 69Right-handed alpha
Helix 22
AC4
A
72 77Right-handed alpha
Helix 23
AC5
A
80 92Right-handed alpha
Helix 24
AC6
A
93 98Right-handed alpha
Helix 25
AC7
A
111 122Right-handed alpha
Helix 26
AC8
A
123 125Right-handed 310
Helix 27
AC9
A
127 133Right-handed alpha
Helix 28
AD1
A
184 189Right-handed 310
Helix 29
AD2
A
191 203Right-handed alpha
Helix 30
AD3
A
213 218Right-handed alpha
Helix 31
AD4
A
221 235Right-handed alpha
Helix 32
AD5
A
261 272Right-handed alpha
Helix 33
AD6
A
282 299Right-handed alpha
Helix 34
AD7
A
299 309Right-handed alpha
Helix 35
AD8
A
313 326Right-handed alpha
Helix 36
AD9
A
330 334Right-handed 310
Helix 37
AE1
A
344 348Right-handed 310
Helix 38
AE2
A
349 369Right-handed alpha
Helix 39
AE3
A
393 396Right-handed 310
Helix 40
AE4
A
414 433Right-handed alpha
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There are 7 sheets in PDB entry 6GFG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
106 110parallel
Strand 3
B
142 147anti-parallel
Strand 4
B
37 45anti-parallel
Strand 5
B
22 27anti-parallel
Strand 6
B
13 18anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 5first strand
Strand 2
B
106 110parallel
Strand 3
B
142 147anti-parallel
Strand 4
B
37 45anti-parallel
Strand 5
B
134 136anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 250first strand
Strand 2
B
240 244anti-parallel
Strand 3
B
163 167anti-parallel
Strand 4
B
370 373anti-parallel
Strand 5
B
403 406anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
376 377first strand
Strand 2
B
398 400anti-parallel
Strand 3
B
389 391anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
106 110parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
37 45anti-parallel
Strand 5
A
22 27anti-parallel
Strand 6
A
13 18anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 5first strand
Strand 2
A
106 110parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
37 45anti-parallel
Strand 5
A
134 136anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
240 244anti-parallel
Strand 3
A
162 167anti-parallel
Strand 4
A
370 377anti-parallel
Strand 5
A
397 406anti-parallel
Strand 6
A
389 392anti-parallel
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