Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GFJ entry

There are 3 chains in PDB entry 6GFJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLU 458
B	ILE 2	GLU 458
C	ILE 2	ILE 376

There are 96 helices in PDB entry 6GFJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	54	Right-handed alpha
Helix 3	AA3	A	66	73	Right-handed alpha
Helix 4	AA4	A	82	87	Right-handed alpha
Helix 5	AA5	A	90	97	Right-handed alpha
Helix 6	AA6	A	128	130	Right-handed 310
Helix 7	AA7	A	131	142	Right-handed alpha
Helix 8	AA8	A	153	165	Right-handed alpha
Helix 9	AA9	A	185	201	Right-handed alpha
Helix 10	AB1	A	209	219	Right-handed alpha
Helix 11	AB2	A	228	230	Right-handed 310
Helix 12	AB3	A	231	239	Right-handed alpha
Helix 13	AB4	A	272	283	Right-handed alpha
Helix 14	AB5	A	286	297	Right-handed alpha
Helix 15	AB6	A	304	312	Right-handed alpha
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	335	353	Right-handed alpha
Helix 18	AB9	A	356	370	Right-handed alpha
Helix 19	AC1	A	370	379	Right-handed alpha
Helix 20	AC2	A	379	387	Right-handed alpha
Helix 21	AC3	A	388	402	Right-handed alpha
Helix 22	AC4	A	406	415	Right-handed alpha
Helix 23	AC5	A	418	434	Right-handed alpha
Helix 24	AC6	A	434	448	Right-handed alpha
Helix 25	AC7	B	16	32	Right-handed alpha
Helix 26	AC8	B	42	54	Right-handed alpha
Helix 27	AC9	B	66	73	Right-handed alpha
Helix 28	AD1	B	82	87	Right-handed alpha
Helix 29	AD2	B	90	97	Right-handed alpha
Helix 30	AD3	B	128	130	Right-handed 310
Helix 31	AD4	B	131	142	Right-handed alpha
Helix 32	AD5	B	153	165	Right-handed alpha
Helix 33	AD6	B	185	201	Right-handed alpha
Helix 34	AD7	B	209	219	Right-handed alpha
Helix 35	AD8	B	228	230	Right-handed 310
Helix 36	AD9	B	231	239	Right-handed alpha
Helix 37	AE1	B	272	283	Right-handed alpha
Helix 38	AE2	B	286	297	Right-handed alpha
Helix 39	AE3	B	304	312	Right-handed alpha
Helix 40	AE4	B	314	327	Right-handed alpha
Helix 41	AE5	B	335	353	Right-handed alpha
Helix 42	AE6	B	356	370	Right-handed alpha
Helix 43	AE7	B	370	379	Right-handed alpha
Helix 44	AE8	B	379	387	Right-handed alpha
Helix 45	AE9	B	388	402	Right-handed alpha
Helix 46	AF1	B	406	415	Right-handed alpha
Helix 47	AF2	B	418	434	Right-handed alpha
Helix 48	AF3	B	434	448	Right-handed alpha
Helix 49	AF4	C	16	32	Right-handed alpha
Helix 50	AF5	C	42	54	Right-handed alpha
Helix 51	AF6	C	66	73	Right-handed alpha
Helix 52	AF7	C	82	87	Right-handed alpha
Helix 53	AF8	C	90	97	Right-handed alpha
Helix 54	AF9	C	128	130	Right-handed 310
Helix 55	AG1	C	131	142	Right-handed alpha
Helix 56	AG2	C	153	165	Right-handed alpha
Helix 57	AG3	C	185	201	Right-handed alpha
Helix 58	AG4	C	209	219	Right-handed alpha
Helix 59	AG5	C	228	230	Right-handed 310
Helix 60	AG6	C	231	239	Right-handed alpha
Helix 61	AG7	C	272	283	Right-handed alpha
Helix 62	AG8	C	286	297	Right-handed alpha
Helix 63	AG9	C	304	312	Right-handed alpha
Helix 64	AH1	C	314	327	Right-handed alpha
Helix 65	AH2	C	335	353	Right-handed alpha
Helix 66	AH3	C	356	370	Right-handed alpha
Helix 67	AH4	C	370	379	Right-handed alpha
Helix 68	AH5	C	379	387	Right-handed alpha
Helix 69	AH6	C	388	402	Right-handed alpha
Helix 70	AH7	C	406	415	Right-handed alpha
Helix 71	AH8	C	418	434	Right-handed alpha
Helix 72	AH9	C	434	448	Right-handed alpha
Helix 73	AI1	D	16	32	Right-handed alpha
Helix 74	AI2	D	42	54	Right-handed alpha
Helix 75	AI3	D	66	73	Right-handed alpha
Helix 76	AI4	D	82	87	Right-handed alpha
Helix 77	AI5	D	90	97	Right-handed alpha
Helix 78	AI6	D	128	130	Right-handed 310
Helix 79	AI7	D	131	142	Right-handed alpha
Helix 80	AI8	D	153	165	Right-handed alpha
Helix 81	AI9	D	185	201	Right-handed alpha
Helix 82	AJ1	D	209	219	Right-handed alpha
Helix 83	AJ2	D	228	230	Right-handed 310
Helix 84	AJ3	D	231	239	Right-handed alpha
Helix 85	AJ4	D	272	283	Right-handed alpha
Helix 86	AJ5	D	286	297	Right-handed alpha
Helix 87	AJ6	D	304	312	Right-handed alpha
Helix 88	AJ7	D	314	327	Right-handed alpha
Helix 89	AJ8	D	335	353	Right-handed alpha
Helix 90	AJ9	D	356	370	Right-handed alpha
Helix 91	AK1	D	370	379	Right-handed alpha
Helix 92	AK2	D	379	387	Right-handed alpha
Helix 93	AK3	D	388	402	Right-handed alpha
Helix 94	AK4	D	406	415	Right-handed alpha
Helix 95	AK5	D	418	434	Right-handed alpha
Helix 96	AK6	D	434	448	Right-handed alpha

There are 12 sheets in PDB entry 6GFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	11	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	7	11	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	11	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	7	11	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	11	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	11	parallel
Strand 3	C	59	63	parallel
Strand 4	C	258	266	anti-parallel
Strand 5	C	328	329	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	8	11	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	106	111	anti-parallel
Strand 6	D	301	302	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	8	11	parallel
Strand 3	D	59	63	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	328	329	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	222	227	parallel
Strand 3	D	114	118	anti-parallel
Strand 4	D	242	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GFJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFJ