Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFK entry

There are 3 chains in PDB entry 6GFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 41ASP 291
B
 SER 43ASP 291
C
 SER 43TYR 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6GFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 65Right-handed alpha
Helix 2
AA2
A
78 94Right-handed alpha
Helix 3
AA3
A
97 101Right-handed 310
Helix 4
AA4
A
115 126Right-handed alpha
Helix 5
AA5
A
135 149Right-handed alpha
Helix 6
AA6
A
215 239Right-handed alpha
Helix 7
AA7
A
251 253Right-handed 310
Helix 8
AA8
A
254 265Right-handed alpha
Helix 9
AA9
B
48 64Right-handed alpha
Helix 10
AB1
B
78 94Right-handed alpha
Helix 11
AB2
B
115 126Right-handed alpha
Helix 12
AB3
B
135 149Right-handed alpha
Helix 13
AB4
B
222 239Right-handed alpha
Helix 14
AB5
B
251 253Right-handed 310
Helix 15
AB6
B
254 265Right-handed alpha
Helix 16
AB7
C
48 65Right-handed alpha
Helix 17
AB8
C
78 94Right-handed alpha
Helix 18
AB9
C
115 126Right-handed alpha
Helix 19
AC1
C
135 149Right-handed alpha
Helix 20
AC2
C
222 239Right-handed alpha
Helix 21
AC3
C
251 253Right-handed 310
Helix 22
AC4
C
254 265Right-handed alpha
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There are 3 sheets in PDB entry 6GFK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 159first strand
Strand 2
A
128 133parallel
Strand 3
A
105 109parallel
Strand 4
A
178 183parallel
Strand 5
A
242 249parallel
Strand 6
A
280 288anti-parallel
Strand 7
A
269 277anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 159first strand
Strand 2
B
128 133parallel
Strand 3
B
105 109parallel
Strand 4
B
178 183parallel
Strand 5
B
242 249parallel
Strand 6
B
280 288anti-parallel
Strand 7
B
269 277anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 159first strand
Strand 2
C
128 133parallel
Strand 3
C
105 109parallel
Strand 4
C
178 183parallel
Strand 5
C
242 249parallel
Strand 6
C
280 288anti-parallel
Strand 7
C
269 277anti-parallel
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