Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFL entry

There are 2 chains in PDB entry 6GFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -1LYS 440
B
 ALA -1MET 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6GFL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 22Right-handed alpha
Helix 2
AA2
A
29 43Right-handed alpha
Helix 3
AA3
A
51 58Right-handed alpha
Helix 4
AA4
A
80 82Right-handed 310
Helix 5
AA5
A
90 112Right-handed alpha
Helix 6
AA6
A
123 139Right-handed alpha
Helix 7
AA7
A
160 177Right-handed alpha
Helix 8
AA8
A
187 190Right-handed 310
Helix 9
AA9
A
191 204Right-handed alpha
Helix 10
AB1
A
237 249Right-handed alpha
Helix 11
AB2
A
258 273Right-handed alpha
Helix 12
AB3
A
274 278Right-handed 310
Helix 13
AB4
A
289 291Right-handed 310
Helix 14
AB5
A
292 307Right-handed alpha
Helix 15
AB6
A
308 315Right-handed 310
Helix 16
AB7
A
321 342Right-handed alpha
Helix 17
AB8
A
356 361Right-handed alpha
Helix 18
AB9
A
366 372Right-handed alpha
Helix 19
AC1
A
380 401Right-handed alpha
Helix 20
AC2
A
401 412Right-handed alpha
Helix 21
AC3
A
421 436Right-handed alpha
Helix 22
AC4
B
15 21Right-handed alpha
Helix 23
AC5
B
28 43Right-handed alpha
Helix 24
AC6
B
51 58Right-handed alpha
Helix 25
AC7
B
80 84Right-handed 310
Helix 26
AC8
B
90 110Right-handed alpha
Helix 27
AC9
B
124 139Right-handed alpha
Helix 28
AD1
B
160 177Right-handed alpha
Helix 29
AD2
B
187 190Right-handed 310
Helix 30
AD3
B
191 204Right-handed alpha
Helix 31
AD4
B
216 221Right-handed alpha
Helix 32
AD5
B
237 249Right-handed alpha
Helix 33
AD6
B
258 273Right-handed alpha
Helix 34
AD7
B
274 278Right-handed 310
Helix 35
AD8
B
289 291Right-handed 310
Helix 36
AD9
B
292 307Right-handed alpha
Helix 37
AE1
B
308 314Right-handed 310
Helix 38
AE2
B
322 331Right-handed alpha
Helix 39
AE3
B
332 344Right-handed alpha
Helix 40
AE4
B
356 361Right-handed alpha
Helix 41
AE5
B
366 372Right-handed alpha
Helix 42
AE6
B
380 400Right-handed alpha
Helix 43
AE7
B
401 412Right-handed alpha
Helix 44
AE8
B
420 435Right-handed alpha
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There are 5 sheets in PDB entry 6GFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
71 77anti-parallel
Strand 3
A
62 68anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
88 89anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 234first strand
Strand 2
A
211 215parallel
Strand 3
A
180 183parallel
Strand 4
A
150 154parallel
Strand 5
A
251 254parallel
Strand 6
A
284 288parallel
Strand 7
A
316 319parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
71 77anti-parallel
Strand 3
B
62 68anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 234first strand
Strand 2
B
211 215parallel
Strand 3
B
180 183parallel
Strand 4
B
150 154parallel
Strand 5
B
251 254parallel
Strand 6
B
284 288parallel
Strand 7
B
316 319parallel
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