Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFM entry

There is 1 chain in PDB entry 6GFM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU -3ARG 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6GFM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 25Right-handed alpha
Helix 2
AA2
A
26 28Right-handed 310
Helix 3
AA3
A
29 41Right-handed alpha
Helix 4
AA4
A
49 56Right-handed alpha
Helix 5
AA5
A
79 81Right-handed 310
Helix 6
AA6
A
89 104Right-handed alpha
Helix 7
AA7
A
106 112Right-handed alpha
Helix 8
AA8
A
123 138Right-handed alpha
Helix 9
AA9
A
159 175Right-handed alpha
Helix 10
AB1
A
186 189Right-handed 310
Helix 11
AB2
A
190 203Right-handed alpha
Helix 12
AB3
A
215 220Right-handed alpha
Helix 13
AB4
A
236 248Right-handed alpha
Helix 14
AB5
A
258 272Right-handed alpha
Helix 15
AB6
A
273 277Right-handed 310
Helix 16
AB7
A
288 290Right-handed 310
Helix 17
AB8
A
291 307Right-handed alpha
Helix 18
AB9
A
308 314Right-handed 310
Helix 19
AC1
A
320 343Right-handed alpha
Helix 20
AC2
A
355 360Right-handed 310
Helix 21
AC3
A
365 371Right-handed alpha
Helix 22
AC4
A
379 396Right-handed alpha
Helix 23
AC5
A
403 408Right-handed alpha
Helix 24
AC6
A
418 434Right-handed alpha
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There are 3 sheets in PDB entry 6GFM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 4first strand
Strand 2
A
71 76anti-parallel
Strand 3
A
61 66anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
87 88anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 233first strand
Strand 2
A
210 214parallel
Strand 3
A
179 182parallel
Strand 4
A
149 153parallel
Strand 5
A
250 253parallel
Strand 6
A
283 287parallel
Strand 7
A
315 318parallel
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