Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GFO entry

There are 4 chains in PDB entry 6GFO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ALA 337
B	SER 0	ALA 337
C	SER 0	ALA 337
D	SER 0	ILE 295

There are 63 helices in PDB entry 6GFO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	24	27	Right-handed 310
Helix 3	AA3	A	39	49	Right-handed alpha
Helix 4	AA4	A	82	86	Right-handed 310
Helix 5	AA5	A	87	92	Right-handed alpha
Helix 6	AA6	A	105	116	Right-handed alpha
Helix 7	AA7	A	138	142	Right-handed 310
Helix 8	AA8	A	153	171	Right-handed alpha
Helix 9	AA9	A	217	222	Right-handed alpha
Helix 10	AB1	A	223	226	Right-handed 310
Helix 11	AB2	A	255	269	Right-handed alpha
Helix 12	AB3	A	283	288	Right-handed 310
Helix 13	AB4	A	299	301	Right-handed 310
Helix 14	AB5	A	318	335	Right-handed alpha
Helix 15	AB6	B	10	23	Right-handed alpha
Helix 16	AB7	B	39	48	Right-handed alpha
Helix 17	AB8	B	82	86	Right-handed 310
Helix 18	AB9	B	105	115	Right-handed alpha
Helix 19	AC1	B	138	142	Right-handed 310
Helix 20	AC2	B	153	171	Right-handed alpha
Helix 21	AC3	B	202	206	Right-handed 310
Helix 22	AC4	B	213	222	Right-handed alpha
Helix 23	AC5	B	223	226	Right-handed 310
Helix 24	AC6	B	255	268	Right-handed alpha
Helix 25	AC7	B	283	288	Right-handed 310
Helix 26	AC8	B	299	301	Right-handed 310
Helix 27	AC9	B	318	335	Right-handed alpha
Helix 28	AD1	C	10	24	Right-handed alpha
Helix 29	AD2	C	25	27	Right-handed 310
Helix 30	AD3	C	39	49	Right-handed alpha
Helix 31	AD4	C	82	86	Right-handed 310
Helix 32	AD5	C	87	92	Right-handed alpha
Helix 33	AD6	C	105	110	Right-handed alpha
Helix 34	AD7	C	110	115	Right-handed alpha
Helix 35	AD8	C	138	142	Right-handed 310
Helix 36	AD9	C	153	171	Right-handed alpha
Helix 37	AE1	C	213	222	Right-handed alpha
Helix 38	AE2	C	223	226	Right-handed 310
Helix 39	AE3	C	255	268	Right-handed alpha
Helix 40	AE4	C	283	288	Right-handed 310
Helix 41	AE5	C	299	301	Right-handed 310
Helix 42	AE6	C	318	335	Right-handed alpha
Helix 43	AE7	D	10	23	Right-handed alpha
Helix 44	AE8	D	39	48	Right-handed alpha
Helix 45	AE9	D	82	86	Right-handed 310
Helix 46	AF1	D	87	92	Right-handed alpha
Helix 47	AF2	D	105	110	Right-handed alpha
Helix 48	AF3	D	110	116	Right-handed alpha
Helix 49	AF4	D	138	142	Right-handed 310
Helix 50	AF5	D	153	171	Right-handed alpha
Helix 51	AF6	D	202	206	Right-handed 310
Helix 52	AF7	D	213	222	Right-handed alpha
Helix 53	AF8	D	223	226	Right-handed 310
Helix 54	AF9	D	255	269	Right-handed alpha
Helix 55	AG1	D	283	288	Right-handed 310
Helix 56	AG2	D	299	301	Right-handed 310
Helix 57	AG3	D	318	335	Right-handed alpha
Helix 58	AG4	E	2	23	Right-handed alpha
Helix 59	AG5	E	26	51	Right-handed alpha
Helix 60	AG6	E	55	64	Right-handed alpha
Helix 61	AG7	F	3	23	Right-handed alpha
Helix 62	AG8	F	26	44	Right-handed alpha
Helix 63	AG9	F	55	64	Right-handed alpha

There are 14 sheets in PDB entry 6GFO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	67	70	anti-parallel
Strand 3	A	73	78	anti-parallel
Strand 4	A	29	35	parallel
Strand 5	A	2	7	parallel
Strand 6	A	95	98	parallel
Strand 7	A	119	122	parallel
Strand 8	A	148	150	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	172	182	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	308	315	anti-parallel
Strand 6	A	294	297	anti-parallel
Strand 7	A	275	278	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	229	236	anti-parallel
Strand 3	A	172	182	parallel
Strand 4	A	242	250	anti-parallel
Strand 5	A	308	315	anti-parallel
Strand 6	A	302	304	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	67	70	anti-parallel
Strand 3	B	74	78	anti-parallel
Strand 4	B	29	35	parallel
Strand 5	B	2	7	parallel
Strand 6	B	95	98	parallel
Strand 7	B	119	122	parallel
Strand 8	B	148	150	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	54	55	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	172	182	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	308	315	anti-parallel
Strand 6	B	294	297	anti-parallel
Strand 7	B	275	278	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	229	236	anti-parallel
Strand 3	B	172	182	parallel
Strand 4	B	242	250	anti-parallel
Strand 5	B	308	315	anti-parallel
Strand 6	B	302	304	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	63	first strand
Strand 2	C	67	70	anti-parallel
Strand 3	C	73	78	anti-parallel
Strand 4	C	29	35	parallel
Strand 5	C	2	7	parallel
Strand 6	C	95	98	parallel
Strand 7	C	119	122	parallel
Strand 8	C	148	150	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	172	182	parallel
Strand 4	C	242	250	anti-parallel
Strand 5	C	308	315	anti-parallel
Strand 6	C	294	297	anti-parallel
Strand 7	C	275	278	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	229	236	anti-parallel
Strand 3	C	172	182	parallel
Strand 4	C	242	250	anti-parallel
Strand 5	C	308	315	anti-parallel
Strand 6	C	302	304	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	63	first strand
Strand 2	D	67	70	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	29	35	parallel
Strand 5	D	2	7	parallel
Strand 6	D	95	98	parallel
Strand 7	D	119	122	parallel
Strand 8	D	148	150	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	54	55	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	172	182	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	308	315	anti-parallel
Strand 6	D	294	297	anti-parallel
Strand 7	D	275	278	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	229	236	anti-parallel
Strand 3	D	172	182	parallel
Strand 4	D	242	250	anti-parallel
Strand 5	D	308	315	anti-parallel
Strand 6	D	302	304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GFO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFO