Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFP entry

There are 2 chains in PDB entry 6GFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0ALA 337
B
 SER 0ALA 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6GFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
39 48Right-handed alpha
Helix 4
AA4
A
82 86Right-handed 310
Helix 5
AA5
A
105 116Right-handed alpha
Helix 6
AA6
A
138 142Right-handed 310
Helix 7
AA7
A
153 171Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
213 222Right-handed alpha
Helix 10
AB1
A
223 226Right-handed 310
Helix 11
AB2
A
255 269Right-handed alpha
Helix 12
AB3
A
283 288Right-handed 310
Helix 13
AB4
A
299 301Right-handed 310
Helix 14
AB5
A
318 335Right-handed alpha
Helix 15
AB6
B
10 24Right-handed alpha
Helix 16
AB7
B
25 27Right-handed 310
Helix 17
AB8
B
39 48Right-handed alpha
Helix 18
AB9
B
82 86Right-handed 310
Helix 19
AC1
B
105 115Right-handed alpha
Helix 20
AC2
B
138 142Right-handed 310
Helix 21
AC3
B
153 171Right-handed alpha
Helix 22
AC4
B
213 222Right-handed alpha
Helix 23
AC5
B
223 226Right-handed 310
Helix 24
AC6
B
255 269Right-handed alpha
Helix 25
AC7
B
283 288Right-handed 310
Helix 26
AC8
B
299 301Right-handed 310
Helix 27
AC9
B
318 335Right-handed alpha
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There are 8 sheets in PDB entry 6GFP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
67 70anti-parallel
Strand 3
A
73 78anti-parallel
Strand 4
A
29 35parallel
Strand 5
A
2 7parallel
Strand 6
A
95 98parallel
Strand 7
A
119 122parallel
Strand 8
A
148 150parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
54 55anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
172 182parallel
Strand 4
A
242 250anti-parallel
Strand 5
A
308 315anti-parallel
Strand 6
A
294 297anti-parallel
Strand 7
A
275 278parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
229 236anti-parallel
Strand 3
A
172 182parallel
Strand 4
A
242 250anti-parallel
Strand 5
A
308 315anti-parallel
Strand 6
A
302 304anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
67 70anti-parallel
Strand 3
B
73 78anti-parallel
Strand 4
B
29 35parallel
Strand 5
B
2 7parallel
Strand 6
B
95 98parallel
Strand 7
B
119 122parallel
Strand 8
B
148 150parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
54 55anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
229 236anti-parallel
Strand 3
B
172 182parallel
Strand 4
B
242 250anti-parallel
Strand 5
B
308 315anti-parallel
Strand 6
B
294 297anti-parallel
Strand 7
B
275 278parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 210first strand
Strand 2
B
229 236anti-parallel
Strand 3
B
172 182parallel
Strand 4
B
242 250anti-parallel
Strand 5
B
308 315anti-parallel
Strand 6
B
302 304anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il