Analysis of interatomic Contacts of Structural Units in PDB entry:
6GFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GFV entry

There are 2 chains in PDB entry 6GFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 46CYS 388
B
 PRO 46CYS 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6GFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 61Right-handed 310
Helix 2
AA2
A
62 69Right-handed alpha
Helix 3
AA3
A
77 89Right-handed alpha
Helix 4
AA4
A
100 105Right-handed 310
Helix 5
AA5
A
106 115Right-handed alpha
Helix 6
AA6
A
144 152Right-handed alpha
Helix 7
AA7
A
153 172Right-handed alpha
Helix 8
AA8
A
192 196Right-handed 310
Helix 9
AA9
A
200 218Right-handed alpha
Helix 10
AB1
A
246 252Right-handed alpha
Helix 11
AB2
A
255 262Right-handed alpha
Helix 12
AB3
A
284 287Right-handed 310
Helix 13
AB4
A
288 298Right-handed alpha
Helix 14
AB5
A
299 302Right-handed 310
Helix 15
AB6
A
318 323Right-handed alpha
Helix 16
AB7
A
326 338Right-handed alpha
Helix 17
AB8
A
349 363Right-handed alpha
Helix 18
AB9
A
367 383Right-handed alpha
Helix 19
AC1
B
53 61Right-handed 310
Helix 20
AC2
B
62 69Right-handed alpha
Helix 21
AC3
B
77 89Right-handed alpha
Helix 22
AC4
B
100 105Right-handed 310
Helix 23
AC5
B
106 114Right-handed alpha
Helix 24
AC6
B
144 152Right-handed alpha
Helix 25
AC7
B
153 172Right-handed alpha
Helix 26
AC8
B
192 196Right-handed 310
Helix 27
AC9
B
200 218Right-handed alpha
Helix 28
AD1
B
246 252Right-handed alpha
Helix 29
AD2
B
255 262Right-handed alpha
Helix 30
AD3
B
284 287Right-handed 310
Helix 31
AD4
B
288 298Right-handed alpha
Helix 32
AD5
B
299 302Right-handed 310
Helix 33
AD6
B
318 323Right-handed alpha
Helix 34
AD7
B
326 337Right-handed alpha
Helix 35
AD8
B
349 363Right-handed alpha
Helix 36
AD9
B
367 383Right-handed alpha
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There are 6 sheets in PDB entry 6GFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
268 271parallel
Strand 3
A
221 227parallel
Strand 4
A
175 176parallel
Strand 5
A
121 124parallel
Strand 6
A
92 95parallel
Strand 7
A
71 74parallel
Strand 8
A
342 344parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
131 132anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 243first strand
Strand 2
A
274 275parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
268 271parallel
Strand 3
B
221 227parallel
Strand 4
B
175 176parallel
Strand 5
B
121 124parallel
Strand 6
B
92 95parallel
Strand 7
B
71 74parallel
Strand 8
B
342 344parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 128first strand
Strand 2
B
131 132anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
242 243first strand
Strand 2
B
274 275parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il