Analysis of interatomic Contacts of Structural Units in PDB entry:
6GG0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GG0 entry

There are 8 chains in PDB entry 6GG0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	PRO 14	MET 360
2	PRO 14	LYS 359
3	LYS 16	THR 358
4	PRO 17	PHE 334
5	VAL 23	MET 360
6	LYS 15	LYS 359
H	GLN 1	SER 123
L	GLU 1	ARG 109

There are 30 helices in PDB entry 6GG0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	31	35	Right-handed 310
Helix 2	AA2	1	81	85	Right-handed 310
Helix 3	AA3	1	121	127	Right-handed 310
Helix 4	AA4	1	183	187	Right-handed 310
Helix 5	AA5	1	204	206	Right-handed 310
Helix 6	AA6	2	31	35	Right-handed 310
Helix 7	AA7	2	81	85	Right-handed 310
Helix 8	AA8	2	121	127	Right-handed 310
Helix 9	AA9	2	184	188	Right-handed 310
Helix 10	AB1	2	303	311	Right-handed alpha
Helix 11	AB2	3	31	35	Right-handed 310
Helix 12	AB3	3	121	127	Right-handed 310
Helix 13	AB4	3	183	188	Right-handed 310
Helix 14	AB5	3	300	313	Right-handed alpha
Helix 15	AB6	4	31	37	Right-handed 310
Helix 16	AB7	4	81	85	Right-handed 310
Helix 17	AB8	4	121	127	Right-handed 310
Helix 18	AB9	4	183	188	Right-handed 310
Helix 19	AC1	4	300	313	Right-handed alpha
Helix 20	AC2	5	31	37	Right-handed 310
Helix 21	AC3	5	121	127	Right-handed 310
Helix 22	AC4	5	184	188	Right-handed 310
Helix 23	AC5	5	190	194	Right-handed 310
Helix 24	AC6	5	204	206	Right-handed 310
Helix 25	AC7	5	300	313	Right-handed alpha
Helix 26	AC8	6	31	35	Right-handed 310
Helix 27	AC9	6	121	127	Right-handed 310
Helix 28	AD1	6	300	311	Right-handed alpha
Helix 29	AD2	H	63	66	Right-handed 310
Helix 30	AD3	H	88	92	Right-handed 310

There are 43 sheets in PDB entry 6GG0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	46	51	first strand
Strand 2	1	284	290	anti-parallel
Strand 3	1	112	115	anti-parallel
Strand 4	1	242	243	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	89	93	first strand
Strand 2	1	259	266	anti-parallel
Strand 3	1	149	155	anti-parallel
Strand 4	1	218	225	anti-parallel
Strand 5	5	233	236	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	107	109	first strand
Strand 2	1	293	295	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	161	163	first strand
Strand 2	1	208	210	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	233	237	first strand
Strand 2	2	218	225	anti-parallel
Strand 3	2	148	155	anti-parallel
Strand 4	2	258	266	anti-parallel
Strand 5	2	89	94	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	270	271	first strand
Strand 2	1	277	278	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	348	350	first strand
Strand 2	1	355	357	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	22	28	first strand
Strand 2	6	330	339	anti-parallel
Strand 3	2	44	51	anti-parallel
Strand 4	2	283	295	anti-parallel
Strand 5	2	107	112	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	22	28	first strand
Strand 2	6	330	339	anti-parallel
Strand 3	2	44	51	anti-parallel
Strand 4	2	283	295	anti-parallel
Strand 5	2	118	120	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	114	115	first strand
Strand 2	2	242	243	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	161	163	first strand
Strand 2	2	208	210	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	233	237	first strand
Strand 2	3	218	225	anti-parallel
Strand 3	3	148	155	anti-parallel
Strand 4	3	260	266	anti-parallel
Strand 5	3	89	91	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	268	271	first strand
Strand 2	2	277	280	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	347	350	first strand
Strand 2	2	355	358	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	44	51	first strand
Strand 2	3	283	293	anti-parallel
Strand 3	3	119	120	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	44	51	first strand
Strand 2	3	283	293	anti-parallel
Strand 3	3	109	115	anti-parallel
Strand 4	3	242	243	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	194	195	first strand
Strand 2	3	161	163	anti-parallel
Strand 3	3	208	210	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	233	237	first strand
Strand 2	4	218	225	anti-parallel
Strand 3	4	149	155	anti-parallel
Strand 4	4	258	266	anti-parallel
Strand 5	4	89	94	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	270	271	first strand
Strand 2	3	277	278	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	45	47	first strand
Strand 2	4	288	292	anti-parallel
Strand 3	4	110	112	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	50	51	first strand
Strand 2	4	283	285	anti-parallel
Strand 3	4	118	120	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	114	115	first strand
Strand 2	4	242	243	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	194	196	first strand
Strand 2	4	160	163	anti-parallel
Strand 3	4	208	210	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	233	237	first strand
Strand 2	5	220	225	anti-parallel
Strand 3	5	148	155	anti-parallel
Strand 4	5	260	266	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	47	51	first strand
Strand 2	5	284	296	anti-parallel
Strand 3	5	117	118	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	47	51	first strand
Strand 2	5	284	296	anti-parallel
Strand 3	5	106	115	anti-parallel
Strand 4	5	242	243	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	161	163	first strand
Strand 2	5	208	210	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	269	271	first strand
Strand 2	5	277	279	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	47	51	first strand
Strand 2	6	284	295	anti-parallel
Strand 3	6	118	119	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	47	51	first strand
Strand 2	6	284	295	anti-parallel
Strand 3	6	107	115	anti-parallel
Strand 4	6	242	243	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	89	94	first strand
Strand 2	6	258	271	anti-parallel
Strand 3	6	145	155	anti-parallel
Strand 4	6	218	222	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	89	94	first strand
Strand 2	6	258	271	anti-parallel
Strand 3	6	277	279	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	161	163	first strand
Strand 2	6	208	210	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	21	25	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	120	121	parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	49	first strand
Strand 2	H	37	41	anti-parallel
Strand 3	H	94	98	anti-parallel
Strand 4	H	117	118	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	51	54	first strand
Strand 2	H	58	61	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	73	74	first strand
Strand 2	H	79	80	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	23	25	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	13	first strand
Strand 2	L	107	108	parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	21	first strand
Strand 2	L	72	75	anti-parallel
Strand 3	L	62	65	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	44	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	89	90	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	44	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	86	anti-parallel
Strand 5	L	104	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GG0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GG0