Analysis of interatomic Contacts of Structural Units in PDB entry:
6GG2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GG2 entry

There is 1 chain in PDB entry 6GG2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 495
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6GG2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 26Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
72 86Right-handed alpha
Helix 4
AA4
A
119 133Right-handed alpha
Helix 5
AA5
A
135 140Right-handed 310
Helix 6
AA6
A
145 153Right-handed alpha
Helix 7
AA7
A
186 202Right-handed alpha
Helix 8
AA8
A
243 245Right-handed 310
Helix 9
AA9
A
246 252Right-handed alpha
Helix 10
AB1
A
270 280Right-handed alpha
Helix 11
AB2
A
309 320Right-handed alpha
Helix 12
AB3
A
330 338Right-handed 310
Helix 13
AB4
A
361 381Right-handed alpha
Helix 14
AB5
A
397 406Right-handed alpha
Helix 15
AB6
A
430 433Right-handed 310
Helix 16
AB7
A
446 448Right-handed 310
Helix 17
AB8
A
449 464Right-handed alpha
Helix 18
AB9
A
479 487Right-handed alpha
Helix 19
AC1
A
490 494Right-handed 310
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There are 5 sheets in PDB entry 6GG2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 208first strand
Strand 2
A
33 38parallel
Strand 3
A
6 10parallel
Strand 4
A
238 241parallel
Strand 5
A
436 440parallel
Strand 6
A
425 428anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
183 185anti-parallel
Strand 3
A
95 97anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
173 179anti-parallel
Strand 3
A
100 106anti-parallel
Strand 4
A
284 287parallel
Strand 5
A
292 295anti-parallel
Strand 6
A
302 307anti-parallel
Strand 7
A
258 268anti-parallel
Strand 8
A
410 418anti-parallel
Strand 9
A
347 348anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 216first strand
Strand 2
A
223 228anti-parallel
Strand 3
A
233 235anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
357 358anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il