Analysis of interatomic Contacts of Structural Units in PDB entry:
6GGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GGO entry

There are 2 chains in PDB entry 6GGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 27SER 227
A
 SER 25SER 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6GGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
39 47Right-handed alpha
Helix 2
AA2
B
57 59Right-handed 310
Helix 3
AA3
B
60 65Right-handed alpha
Helix 4
AA4
B
79 101Right-handed alpha
Helix 5
AA5
B
101 115Right-handed alpha
Helix 6
AA6
B
136 143Right-handed alpha
Helix 7
AA7
B
175 190Right-handed alpha
Helix 8
AA8
B
201 214Right-handed alpha
Helix 9
AA9
A
39 47Right-handed alpha
Helix 10
AB1
A
57 59Right-handed 310
Helix 11
AB2
A
60 65Right-handed alpha
Helix 12
AB3
A
79 101Right-handed alpha
Helix 13
AB4
A
101 115Right-handed alpha
Helix 14
AB5
A
136 143Right-handed alpha
Helix 15
AB6
A
175 190Right-handed alpha
Helix 16
AB7
A
201 214Right-handed alpha
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There are 4 sheets in PDB entry 6GGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
123 127parallel
Strand 3
B
148 151parallel
Strand 4
B
132 133anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
172 173anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 69first strand
Strand 2
A
123 127parallel
Strand 3
A
148 151parallel
Strand 4
A
132 133anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 165first strand
Strand 2
A
172 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il