Analysis of interatomic Contacts of Structural Units in PDB entry:
6GGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GGP entry

There is 1 chain in PDB entry 6GGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 20LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6GGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 28Right-handed alpha
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
75 77Right-handed 310
Helix 4
AA4
A
78 85Right-handed alpha
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
130 135Right-handed 310
Helix 7
AA7
A
145 153Right-handed alpha
Helix 8
AA8
A
164 174Right-handed alpha
Helix 9
AA9
A
184 194Right-handed alpha
Helix 10
AB1
A
217 231Right-handed alpha
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There are 4 sheets in PDB entry 6GGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
29 34parallel
Strand 3
A
90 91parallel
Strand 4
A
212 213anti-parallel
Strand 5
A
106 107anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
50 51anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
138 142parallel
Strand 3
A
179 183parallel
Strand 4
A
112 121anti-parallel
Strand 5
A
197 199anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
138 142parallel
Strand 3
A
179 183parallel
Strand 4
A
112 121anti-parallel
Strand 5
A
204 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il