Analysis of interatomic Contacts of Structural Units in PDB entry:
6GGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GGR entry

There are 2 chains in PDB entry 6GGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 19ASN 186
B
 PHE 28SER 227
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6GGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 124Right-handed 310
Helix 2
AA2
A
125 136Right-handed alpha
Helix 3
AA3
A
144 148Right-handed 310
Helix 4
AA4
B
31 36Right-handed alpha
Helix 5
AA5
B
39 47Right-handed alpha
Helix 6
AA6
B
57 59Right-handed 310
Helix 7
AA7
B
60 65Right-handed alpha
Helix 8
AA8
B
79 101Right-handed alpha
Helix 9
AA9
B
101 115Right-handed alpha
Helix 10
AB1
B
153 157Right-handed 310
Helix 11
AB2
B
175 190Right-handed alpha
Helix 12
AB3
B
201 214Right-handed alpha
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There are 6 sheets in PDB entry 6GGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 25first strand
Strand 2
A
60 64anti-parallel
Strand 3
A
110 112anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 103anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
156 166anti-parallel
Strand 5
A
172 174anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
99 103anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
156 166anti-parallel
Strand 5
A
178 184anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
117 119anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 69first strand
Strand 2
B
123 127parallel
Strand 3
B
148 151parallel
Strand 4
B
132 133anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
172 173anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il