Analysis of interatomic Contacts of Structural Units in PDB entry:
6GGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GGU entry

There is 1 chain in PDB entry 6GGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6GGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
22 33Right-handed alpha
Helix 3
AA3
A
34 40Right-handed 310
Helix 4
AA4
A
41 53Right-handed alpha
Helix 5
AA5
A
64 67Right-handed 310
Helix 6
AA6
A
77 86Right-handed alpha
Helix 7
AA7
A
88 91Right-handed 310
Helix 8
AA8
A
92 107Right-handed alpha
Helix 9
AA9
A
119 124Right-handed 310
Helix 10
AB1
A
130 136Right-handed alpha
Helix 11
AB2
A
149 157Right-handed alpha
Helix 12
AB3
A
158 162Right-handed 310
Helix 13
AB4
A
175 184Right-handed alpha
Helix 14
AB5
A
222 238Right-handed alpha
Helix 15
AB6
A
247 253Right-handed alpha
Helix 16
AB7
A
255 276Right-handed alpha
Helix 17
AB8
A
280 303Right-handed alpha
Helix 18
AB9
A
306 311Right-handed alpha
Helix 19
AC1
A
312 315Right-handed 310
Helix 20
AC2
A
316 321Right-handed alpha
Helix 21
AC3
A
322 324Right-handed 310
Helix 22
AC4
A
325 330Right-handed 310
Helix 23
AC5
A
331 343Right-handed alpha
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There are 3 sheets in PDB entry 6GGU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
58 62parallel
Strand 3
A
2 6parallel
Strand 4
A
140 143parallel
Strand 5
A
167 170parallel
Strand 6
A
198 201parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 72first strand
Strand 2
A
113 116parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 218first strand
Strand 2
A
240 244parallel
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