Analysis of interatomic Contacts of Structural Units in PDB entry:
6GGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GGV entry

There are 2 chains in PDB entry 6GGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 21LYS 232
B
 ALA 20LYS 232
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6GGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 28Right-handed alpha
Helix 2
AA2
A
52 66Right-handed alpha
Helix 3
AA3
A
75 77Right-handed 310
Helix 4
AA4
A
78 85Right-handed alpha
Helix 5
AA5
A
98 103Right-handed alpha
Helix 6
AA6
A
130 135Right-handed 310
Helix 7
AA7
A
145 152Right-handed alpha
Helix 8
AA8
A
164 175Right-handed alpha
Helix 9
AA9
A
184 193Right-handed alpha
Helix 10
AB1
A
217 232Right-handed alpha
Helix 11
AB2
B
21 28Right-handed alpha
Helix 12
AB3
B
52 66Right-handed alpha
Helix 13
AB4
B
75 77Right-handed 310
Helix 14
AB5
B
78 85Right-handed alpha
Helix 15
AB6
B
100 104Right-handed 310
Helix 16
AB7
B
131 135Right-handed 310
Helix 17
AB8
B
145 152Right-handed alpha
Helix 18
AB9
B
164 174Right-handed alpha
Helix 19
AC1
B
184 194Right-handed alpha
Helix 20
AC2
B
217 232Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6GGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
29 34parallel
Strand 3
A
90 91parallel
Strand 4
A
212 213anti-parallel
Strand 5
A
106 107anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 114first strand
Strand 2
A
207 209anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 162first strand
Strand 2
A
138 142parallel
Strand 3
A
179 183parallel
Strand 4
A
116 121anti-parallel
Strand 5
A
197 199anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 73first strand
Strand 2
B
29 34parallel
Strand 3
B
90 91parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 44first strand
Strand 2
B
50 51anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
212 213anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
207 209anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 162first strand
Strand 2
B
138 142parallel
Strand 3
B
179 183parallel
Strand 4
B
116 121anti-parallel
Strand 5
B
197 199anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il