Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GH3 entry

There are 2 chains in PDB entry 6GH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	SER 911
B	LYS 4	VAL 385

There are 62 helices in PDB entry 6GH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	23	Right-handed 310
Helix 2	AA2	A	63	68	Right-handed alpha
Helix 3	AA3	A	90	95	Right-handed alpha
Helix 4	AA4	A	169	173	Right-handed 310
Helix 5	AA5	A	176	182	Right-handed alpha
Helix 6	AA6	A	231	237	Right-handed alpha
Helix 7	AA7	A	245	250	Right-handed alpha
Helix 8	AA8	A	298	307	Right-handed alpha
Helix 9	AA9	A	310	328	Right-handed alpha
Helix 10	AB1	A	336	357	Right-handed alpha
Helix 11	AB2	A	372	387	Right-handed alpha
Helix 12	AB3	A	390	400	Right-handed alpha
Helix 13	AB4	A	430	434	Right-handed 310
Helix 14	AB5	A	435	449	Right-handed alpha
Helix 15	AB6	A	450	455	Right-handed 310
Helix 16	AB7	A	477	481	Right-handed 310
Helix 17	AB8	A	496	510	Right-handed alpha
Helix 18	AB9	A	538	563	Right-handed alpha
Helix 19	AC1	A	572	576	Right-handed 310
Helix 20	AC2	A	577	581	Right-handed 310
Helix 21	AC3	A	588	604	Right-handed alpha
Helix 22	AC4	A	616	638	Right-handed alpha
Helix 23	AC5	A	672	682	Right-handed alpha
Helix 24	AC6	A	685	700	Right-handed alpha
Helix 25	AC7	A	721	726	Right-handed 310
Helix 26	AC8	A	738	751	Right-handed alpha
Helix 27	AC9	A	753	770	Right-handed alpha
Helix 28	AD1	A	770	775	Right-handed alpha
Helix 29	AD2	A	797	809	Right-handed alpha
Helix 30	AD3	A	827	831	Right-handed 310
Helix 31	AD4	A	887	893	Right-handed alpha
Helix 32	AD5	B	20	23	Right-handed 310
Helix 33	AD6	B	63	68	Right-handed alpha
Helix 34	AD7	B	90	95	Right-handed alpha
Helix 35	AD8	B	169	173	Right-handed 310
Helix 36	AD9	B	176	182	Right-handed alpha
Helix 37	AE1	B	231	237	Right-handed alpha
Helix 38	AE2	B	245	250	Right-handed alpha
Helix 39	AE3	B	298	307	Right-handed alpha
Helix 40	AE4	B	310	328	Right-handed alpha
Helix 41	AE5	B	336	357	Right-handed alpha
Helix 42	AE6	B	372	387	Right-handed alpha
Helix 43	AE7	B	390	400	Right-handed alpha
Helix 44	AE8	B	430	434	Right-handed 310
Helix 45	AE9	B	435	449	Right-handed alpha
Helix 46	AF1	B	450	455	Right-handed 310
Helix 47	AF2	B	477	481	Right-handed 310
Helix 48	AF3	B	496	510	Right-handed alpha
Helix 49	AF4	B	538	563	Right-handed alpha
Helix 50	AF5	B	572	576	Right-handed 310
Helix 51	AF6	B	577	581	Right-handed 310
Helix 52	AF7	B	588	604	Right-handed alpha
Helix 53	AF8	B	616	638	Right-handed alpha
Helix 54	AF9	B	672	682	Right-handed alpha
Helix 55	AG1	B	685	700	Right-handed alpha
Helix 56	AG2	B	721	726	Right-handed 310
Helix 57	AG3	B	738	751	Right-handed alpha
Helix 58	AG4	B	753	770	Right-handed alpha
Helix 59	AG5	B	770	775	Right-handed alpha
Helix 60	AG6	B	797	809	Right-handed alpha
Helix 61	AG7	B	827	831	Right-handed 310
Helix 62	AG8	B	887	893	Right-handed alpha

There are 29 sheets in PDB entry 6GH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	15	18	anti-parallel
Strand 3	A	105	110	anti-parallel
Strand 4	A	113	120	anti-parallel
Strand 5	A	125	132	anti-parallel
Strand 6	A	139	149	anti-parallel
Strand 7	A	283	293	anti-parallel
Strand 8	A	212	219	anti-parallel
Strand 9	A	192	195	anti-parallel
Strand 10	A	185	189	anti-parallel
Strand 11	A	261	263	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	37	40	anti-parallel
Strand 3	A	46	49	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	155	164	anti-parallel
Strand 4	A	268	272	anti-parallel
Strand 5	A	227	228	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	73	78	anti-parallel
Strand 3	A	155	164	anti-parallel
Strand 4	A	276	278	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	205	208	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	333	first strand
Strand 2	A	836	843	anti-parallel
Strand 3	A	846	853	anti-parallel
Strand 4	A	899	908	parallel
Strand 5	A	863	870	anti-parallel
Strand 6	A	873	874	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	494	495	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	466	first strand
Strand 2	A	471	472	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	537	first strand
Strand 2	A	652	653	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	566	570	first strand
Strand 2	A	611	615	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	641	first strand
Strand 2	A	647	649	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	702	first strand
Strand 2	A	706	707	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	736	737	first strand
Strand 2	A	783	784	anti-parallel
Strand 3	A	790	791	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	813	816	first strand
Strand 2	A	819	822	anti-parallel
Strand 3	A	885	886	anti-parallel

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There are 11 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	8	first strand
Strand 2	B	15	18	anti-parallel
Strand 3	B	105	110	anti-parallel
Strand 4	B	113	120	anti-parallel
Strand 5	B	125	132	anti-parallel
Strand 6	B	139	149	anti-parallel
Strand 7	B	283	293	anti-parallel
Strand 8	B	212	219	anti-parallel
Strand 9	B	192	195	anti-parallel
Strand 10	B	185	189	anti-parallel
Strand 11	B	261	263	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	37	40	anti-parallel
Strand 3	B	46	49	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	155	164	anti-parallel
Strand 4	B	268	272	anti-parallel
Strand 5	B	227	228	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	85	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	155	164	anti-parallel
Strand 4	B	276	278	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	199	202	first strand
Strand 2	B	205	208	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	330	333	first strand
Strand 2	B	836	843	anti-parallel
Strand 3	B	846	853	anti-parallel
Strand 4	B	899	907	parallel
Strand 5	B	864	870	anti-parallel
Strand 6	B	873	874	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	419	420	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	494	495	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	465	466	first strand
Strand 2	B	471	472	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	537	first strand
Strand 2	B	652	653	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	570	first strand
Strand 2	B	611	615	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	641	first strand
Strand 2	B	647	649	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	701	702	first strand
Strand 2	B	706	707	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	736	737	first strand
Strand 2	B	783	784	anti-parallel
Strand 3	B	790	791	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	813	816	first strand
Strand 2	B	819	822	anti-parallel
Strand 3	B	884	886	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH3