Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GH5 entry

There are 8 chains in PDB entry 6GH5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	PRO 323
B	SER 4	ARG 238
C	MET 1	ASP 1341
D	LEU 4	GLY 1376
E	MET 1	GLN 75
M	ASP 106	ARG 473
F	C -16	C 29
G	G -29	G 16

There are123 helices in PDB entry 6GH5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	113	115	Right-handed 310
Helix 4	AA4	A	157	162	Right-handed 310
Helix 5	AA5	A	212	228	Right-handed alpha
Helix 6	AA6	A	256	261	Right-handed 310
Helix 7	AA7	A	264	272	Right-handed alpha
Helix 8	AA8	A	278	283	Right-handed alpha
Helix 9	AA9	A	285	290	Right-handed alpha
Helix 10	AB1	A	295	307	Right-handed alpha
Helix 11	AB2	B	34	50	Right-handed alpha
Helix 12	AB3	B	70	74	Right-handed 310
Helix 13	AB4	B	77	85	Right-handed alpha
Helix 14	AB5	B	160	164	Right-handed 310
Helix 15	AB6	B	212	228	Right-handed alpha
Helix 16	AB7	B	229	231	Right-handed 310
Helix 17	AB8	C	5	10	Right-handed alpha
Helix 18	AB9	C	29	39	Right-handed alpha
Helix 19	AC1	C	48	55	Right-handed alpha
Helix 20	AC2	C	81	89	Right-handed alpha
Helix 21	AC3	C	159	163	Right-handed 310
Helix 22	AC4	C	206	212	Right-handed alpha
Helix 23	AC5	C	216	225	Right-handed alpha
Helix 24	AC6	C	270	280	Right-handed alpha
Helix 25	AC7	C	288	295	Right-handed 310
Helix 26	AC8	C	318	329	Right-handed alpha
Helix 27	AC9	C	347	354	Right-handed alpha
Helix 28	AD1	C	358	371	Right-handed alpha
Helix 29	AD2	C	378	389	Right-handed alpha
Helix 30	AD3	C	397	409	Right-handed alpha
Helix 31	AD4	C	421	437	Right-handed alpha
Helix 32	AD5	C	447	449	Right-handed 310
Helix 33	AD6	C	455	476	Right-handed alpha
Helix 34	AD7	C	487	492	Right-handed alpha
Helix 35	AD8	C	495	506	Right-handed alpha
Helix 36	AD9	C	519	528	Right-handed alpha
Helix 37	AE1	C	608	612	Right-handed alpha
Helix 38	AE2	C	656	660	Right-handed 310
Helix 39	AE3	C	662	667	Right-handed alpha
Helix 40	AE4	C	670	674	Right-handed 310
Helix 41	AE5	C	675	686	Right-handed alpha
Helix 42	AE6	C	704	713	Right-handed alpha
Helix 43	AE7	C	820	825	Right-handed alpha
Helix 44	AE8	C	858	863	Right-handed alpha
Helix 45	AE9	C	896	906	Right-handed alpha
Helix 46	AF1	C	907	911	Right-handed 310
Helix 47	AF2	C	946	979	Right-handed alpha
Helix 48	AF3	C	986	991	Right-handed alpha
Helix 49	AF4	C	993	1000	Right-handed 310
Helix 50	AF5	C	1003	1037	Right-handed alpha
Helix 51	AF6	C	1081	1085	Right-handed 310
Helix 52	AF7	C	1099	1101	Right-handed 310
Helix 53	AF8	C	1102	1107	Right-handed alpha
Helix 54	AF9	C	1109	1134	Right-handed alpha
Helix 55	AG1	C	1137	1150	Right-handed alpha
Helix 56	AG2	C	1168	1176	Right-handed alpha
Helix 57	AG3	C	1191	1201	Right-handed alpha
Helix 58	AG4	C	1238	1243	Right-handed alpha
Helix 59	AG5	C	1271	1282	Right-handed alpha
Helix 60	AG6	C	1283	1292	Right-handed alpha
Helix 61	AG7	C	1297	1310	Right-handed alpha
Helix 62	AG8	C	1320	1332	Right-handed alpha
Helix 63	AG9	D	26	34	Right-handed alpha
Helix 64	AH1	D	96	100	Right-handed 310
Helix 65	AH2	D	122	128	Right-handed alpha
Helix 66	AH3	D	131	140	Right-handed alpha
Helix 67	AH4	D	161	172	Right-handed alpha
Helix 68	AH5	D	182	191	Right-handed alpha
Helix 69	AH6	D	193	207	Right-handed alpha
Helix 70	AH7	D	212	231	Right-handed alpha
Helix 71	AH8	D	233	237	Right-handed 310
Helix 72	AH9	D	246	250	Right-handed 310
Helix 73	AI1	D	263	285	Right-handed alpha
Helix 74	AI2	D	288	308	Right-handed alpha
Helix 75	AI3	D	377	389	Right-handed alpha
Helix 76	AI4	D	393	404	Right-handed alpha
Helix 77	AI5	D	406	417	Right-handed alpha
Helix 78	AI6	D	430	432	Right-handed 310
Helix 79	AI7	D	450	452	Right-handed 310
Helix 80	AI8	D	453	458	Right-handed alpha
Helix 81	AI9	D	474	482	Right-handed alpha
Helix 82	AJ1	D	504	514	Right-handed alpha
Helix 83	AJ2	D	532	537	Right-handed alpha
Helix 84	AJ3	D	573	580	Right-handed alpha
Helix 85	AJ4	D	581	583	Right-handed 310
Helix 86	AJ5	D	597	613	Right-handed alpha
Helix 87	AJ6	D	613	635	Right-handed alpha
Helix 88	AJ7	D	640	644	Right-handed 310
Helix 89	AJ8	D	649	670	Right-handed alpha
Helix 90	AJ9	D	674	702	Right-handed alpha
Helix 91	AK1	D	720	729	Right-handed alpha
Helix 92	AK2	D	733	741	Right-handed alpha
Helix 93	AK3	D	768	805	Right-handed alpha
Helix 94	AK4	D	834	840	Right-handed alpha
Helix 95	AK5	D	865	875	Right-handed alpha
Helix 96	AK6	D	915	925	Right-handed alpha
Helix 97	AK7	D	1137	1146	Right-handed alpha
Helix 98	AK8	D	1216	1223	Right-handed alpha
Helix 99	AK9	D	1225	1244	Right-handed alpha
Helix 100	AL1	D	1249	1260	Right-handed alpha
Helix 101	AL2	D	1279	1293	Right-handed alpha
Helix 102	AL3	D	1309	1315	Right-handed alpha
Helix 103	AL4	D	1328	1339	Right-handed alpha
Helix 104	AL5	D	1346	1354	Right-handed alpha
Helix 105	AL6	D	1360	1376	Right-handed alpha
Helix 106	AL7	E	6	13	Right-handed alpha
Helix 107	AL8	E	15	33	Right-handed alpha
Helix 108	AL9	E	45	56	Right-handed alpha
Helix 109	AM1	E	60	75	Right-handed alpha
Helix 110	AM2	M	119	130	Right-handed alpha
Helix 111	AM3	M	134	146	Right-handed alpha
Helix 112	AM4	M	158	164	Right-handed alpha
Helix 113	AM5	M	171	184	Right-handed alpha
Helix 114	AM6	M	195	203	Right-handed alpha
Helix 115	AM7	M	212	223	Right-handed alpha
Helix 116	AM8	M	233	239	Right-handed alpha
Helix 117	AM9	M	243	255	Right-handed alpha
Helix 118	AN1	M	321	355	Right-handed alpha
Helix 119	AN2	M	366	374	Right-handed alpha
Helix 120	AN3	M	377	388	Right-handed alpha
Helix 121	AN4	M	416	430	Right-handed alpha
Helix 122	AN5	M	438	449	Right-handed alpha
Helix 123	AN6	M	456	464	Right-handed alpha

There are 38 sheets in PDB entry 6GH5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	199	206	anti-parallel
Strand 4	A	182	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	105	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	200	206	anti-parallel
Strand 4	B	182	188	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	61	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	97	105	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	94	104	anti-parallel
Strand 3	C	115	118	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	94	104	anti-parallel
Strand 3	C	122	127	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	332	333	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	239	first strand
Strand 2	C	285	286	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	261	263	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	607	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	637	first strand
Strand 2	C	642	646	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	726	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	749	752	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	840	first strand
Strand 2	C	1048	1058	anti-parallel
Strand 3	C	927	931	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1269	1270	first strand
Strand 2	D	345	346	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1339	first strand
Strand 2	D	20	24	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	111	first strand
Strand 2	D	239	243	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	357	first strand
Strand 2	D	447	449	parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	434	442	parallel
Strand 5	D	421	424	anti-parallel
Strand 6	D	465	469	anti-parallel
Strand 7	D	350	357	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	528	first strand
Strand 2	D	549	553	parallel
Strand 3	D	567	571	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	748	749	first strand
Strand 2	D	753	754	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	959	961	first strand
Strand 2	D	981	983	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	966	967	first strand
Strand 2	D	973	974	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1002	1003	first strand
Strand 2	D	1018	1019	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1059	1060	first strand
Strand 2	D	1106	1107	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1278	first strand
Strand 2	D	1264	1266	anti-parallel
Strand 3	D	1302	1303	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	287	288	first strand
Strand 2	M	277	280	anti-parallel
Strand 3	M	390	391	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GH5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH5