Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6GH6 entry

There are 8 chains in PDB entry 6GH6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	VAL 237
B	SER 4	ARG 238
C	MET 1	ASP 1341
D	THR 14	GLY 1376
E	MET 1	GLN 75
M	GLU 115	ARG 473
N	G -33	T 14
T	A -14	C 33

There are116 helices in PDB entry 6GH6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	154	159	Right-handed alpha
Helix 5	AA5	A	160	162	Right-handed 310
Helix 6	AA6	A	212	227	Right-handed alpha
Helix 7	AA7	B	34	50	Right-handed alpha
Helix 8	AA8	B	70	74	Right-handed 310
Helix 9	AA9	B	77	85	Right-handed alpha
Helix 10	AB1	B	212	227	Right-handed alpha
Helix 11	AB2	C	5	10	Right-handed 310
Helix 12	AB3	C	28	39	Right-handed alpha
Helix 13	AB4	C	48	57	Right-handed alpha
Helix 14	AB5	C	81	88	Right-handed alpha
Helix 15	AB6	C	159	163	Right-handed 310
Helix 16	AB7	C	206	212	Right-handed alpha
Helix 17	AB8	C	216	225	Right-handed alpha
Helix 18	AB9	C	242	246	Right-handed 310
Helix 19	AC1	C	270	280	Right-handed alpha
Helix 20	AC2	C	288	295	Right-handed 310
Helix 21	AC3	C	318	329	Right-handed alpha
Helix 22	AC4	C	347	354	Right-handed alpha
Helix 23	AC5	C	359	371	Right-handed alpha
Helix 24	AC6	C	378	388	Right-handed alpha
Helix 25	AC7	C	397	409	Right-handed alpha
Helix 26	AC8	C	421	438	Right-handed alpha
Helix 27	AC9	C	447	449	Right-handed 310
Helix 28	AD1	C	455	479	Right-handed alpha
Helix 29	AD2	C	487	492	Right-handed alpha
Helix 30	AD3	C	495	508	Right-handed alpha
Helix 31	AD4	C	519	528	Right-handed alpha
Helix 32	AD5	C	544	549	Right-handed alpha
Helix 33	AD6	C	551	555	Right-handed 310
Helix 34	AD7	C	607	613	Right-handed alpha
Helix 35	AD8	C	657	661	Right-handed 310
Helix 36	AD9	C	664	668	Right-handed 310
Helix 37	AE1	C	675	688	Right-handed alpha
Helix 38	AE2	C	704	712	Right-handed alpha
Helix 39	AE3	C	820	825	Right-handed alpha
Helix 40	AE4	C	858	863	Right-handed alpha
Helix 41	AE5	C	896	906	Right-handed alpha
Helix 42	AE6	C	907	911	Right-handed 310
Helix 43	AE7	C	944	979	Right-handed alpha
Helix 44	AE8	C	986	992	Right-handed alpha
Helix 45	AE9	C	993	1000	Right-handed 310
Helix 46	AF1	C	1003	1037	Right-handed alpha
Helix 47	AF2	C	1101	1107	Right-handed alpha
Helix 48	AF3	C	1109	1133	Right-handed alpha
Helix 49	AF4	C	1137	1150	Right-handed alpha
Helix 50	AF5	C	1168	1177	Right-handed alpha
Helix 51	AF6	C	1191	1201	Right-handed alpha
Helix 52	AF7	C	1271	1282	Right-handed alpha
Helix 53	AF8	C	1284	1292	Right-handed alpha
Helix 54	AF9	C	1298	1310	Right-handed alpha
Helix 55	AG1	C	1321	1333	Right-handed alpha
Helix 56	AG2	D	26	34	Right-handed alpha
Helix 57	AG3	D	131	140	Right-handed alpha
Helix 58	AG4	D	161	173	Right-handed alpha
Helix 59	AG5	D	182	191	Right-handed alpha
Helix 60	AG6	D	193	208	Right-handed alpha
Helix 61	AG7	D	210	231	Right-handed alpha
Helix 62	AG8	D	233	238	Right-handed 310
Helix 63	AG9	D	246	250	Right-handed 310
Helix 64	AH1	D	263	286	Right-handed alpha
Helix 65	AH2	D	288	308	Right-handed alpha
Helix 66	AH3	D	326	331	Right-handed alpha
Helix 67	AH4	D	370	377	Right-handed alpha
Helix 68	AH5	D	377	389	Right-handed alpha
Helix 69	AH6	D	393	404	Right-handed alpha
Helix 70	AH7	D	405	417	Right-handed alpha
Helix 71	AH8	D	430	434	Right-handed 310
Helix 72	AH9	D	474	483	Right-handed alpha
Helix 73	AI1	D	485	489	Right-handed 310
Helix 74	AI2	D	504	514	Right-handed alpha
Helix 75	AI3	D	531	539	Right-handed alpha
Helix 76	AI4	D	573	580	Right-handed alpha
Helix 77	AI5	D	581	583	Right-handed 310
Helix 78	AI6	D	588	592	Right-handed 310
Helix 79	AI7	D	597	613	Right-handed alpha
Helix 80	AI8	D	614	634	Right-handed alpha
Helix 81	AI9	D	649	670	Right-handed alpha
Helix 82	AJ1	D	674	701	Right-handed alpha
Helix 83	AJ2	D	720	729	Right-handed alpha
Helix 84	AJ3	D	733	741	Right-handed alpha
Helix 85	AJ4	D	768	783	Right-handed alpha
Helix 86	AJ5	D	784	805	Right-handed alpha
Helix 87	AJ6	D	834	840	Right-handed alpha
Helix 88	AJ7	D	865	875	Right-handed alpha
Helix 89	AJ8	D	916	925	Right-handed alpha
Helix 90	AJ9	D	1137	1147	Right-handed alpha
Helix 91	AK1	D	1216	1224	Right-handed alpha
Helix 92	AK2	D	1225	1242	Right-handed alpha
Helix 93	AK3	D	1249	1260	Right-handed alpha
Helix 94	AK4	D	1279	1291	Right-handed alpha
Helix 95	AK5	D	1327	1339	Right-handed alpha
Helix 96	AK6	D	1347	1353	Right-handed alpha
Helix 97	AK7	D	1360	1375	Right-handed alpha
Helix 98	AK8	E	6	11	Right-handed alpha
Helix 99	AK9	E	17	33	Right-handed alpha
Helix 100	AL1	E	45	56	Right-handed alpha
Helix 101	AL2	E	60	75	Right-handed alpha
Helix 102	AL3	M	120	131	Right-handed alpha
Helix 103	AL4	M	135	146	Right-handed alpha
Helix 104	AL5	M	157	164	Right-handed alpha
Helix 105	AL6	M	171	183	Right-handed alpha
Helix 106	AL7	M	197	207	Right-handed alpha
Helix 107	AL8	M	212	223	Right-handed alpha
Helix 108	AL9	M	224	231	Right-handed alpha
Helix 109	AM1	M	234	239	Right-handed alpha
Helix 110	AM2	M	243	255	Right-handed alpha
Helix 111	AM3	M	336	355	Right-handed alpha
Helix 112	AM4	M	366	374	Right-handed alpha
Helix 113	AM5	M	377	388	Right-handed alpha
Helix 114	AM6	M	416	428	Right-handed alpha
Helix 115	AM7	M	438	449	Right-handed alpha
Helix 116	AM8	M	455	463	Right-handed alpha

There are 36 sheets in PDB entry 6GH6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	199	206	anti-parallel
Strand 4	A	182	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	105	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	23	28	anti-parallel
Strand 3	B	200	207	anti-parallel
Strand 4	B	180	188	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	93	105	anti-parallel
Strand 3	C	113	117	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	71	first strand
Strand 2	C	93	105	anti-parallel
Strand 3	C	122	128	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	512	513	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel
Strand 4	C	572	573	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	238	239	anti-parallel
Strand 3	C	230	231	anti-parallel
Strand 4	C	332	333	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	335	336	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	616	617	first strand
Strand 2	C	633	637	anti-parallel
Strand 3	C	642	646	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	724	727	first strand
Strand 2	C	731	735	anti-parallel
Strand 3	C	748	752	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	830	843	anti-parallel
Strand 3	C	1046	1058	anti-parallel
Strand 4	C	927	931	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	830	843	anti-parallel
Strand 3	C	1046	1058	anti-parallel
Strand 4	C	934	935	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	865	866	first strand
Strand 2	C	870	871	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1336	first strand
Strand 2	D	23	24	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	106	first strand
Strand 2	D	241	243	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	147	anti-parallel
Strand 3	D	177	179	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	437	first strand
Strand 2	D	421	424	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	350	357	anti-parallel
Strand 5	D	447	449	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	366	369	first strand
Strand 2	D	439	442	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	528	first strand
Strand 2	D	550	553	parallel
Strand 3	D	567	570	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	959	961	first strand
Strand 2	D	980	983	anti-parallel
Strand 3	D	996	997	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1160	1163	first strand
Strand 2	D	1202	1204	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1278	first strand
Strand 2	D	1264	1266	anti-parallel
Strand 3	D	1302	1303	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	279	281	first strand
Strand 2	M	286	288	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6GH6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH6