Analysis of interatomic Contacts of Structural Units in PDB entry:
6GH8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6GH8 entry

There are 4 chains in PDB entry 6GH8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 GLN 87THR 196
A
 LEU 24LYS 143
B
 GLN 87THR 196
C
 LEU 24LYS 143
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6GH8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
112 120Right-handed alpha
Helix 2
AA2
D
120 135Right-handed alpha
Helix 3
AA3
D
161 174Right-handed alpha
Helix 4
AA4
B
112 120Right-handed alpha
Helix 5
AA5
B
120 135Right-handed alpha
Helix 6
AA6
B
162 174Right-handed alpha
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There are 6 sheets in PDB entry 6GH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
89 91first strand
Strand 2
D
96 102anti-parallel
Strand 3
D
183 190anti-parallel
Strand 4
D
152 158anti-parallel
Strand 5
D
143 145anti-parallel
Strand 6
D
109 110anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
54 60parallel
Strand 3
A
119 125anti-parallel
Strand 4
A
87 92anti-parallel
Strand 5
A
99 104anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
68 72anti-parallel
Strand 4
A
113 114anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
96 102anti-parallel
Strand 3
B
183 190anti-parallel
Strand 4
B
152 158anti-parallel
Strand 5
B
143 145anti-parallel
Strand 6
B
109 110anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 33first strand
Strand 2
C
54 60parallel
Strand 3
C
119 125anti-parallel
Strand 4
C
87 91anti-parallel
Strand 5
C
100 104anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 41first strand
Strand 2
C
136 141anti-parallel
Strand 3
C
68 72anti-parallel
Strand 4
C
113 114anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il